View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072_low_12 (Length: 261)
Name: NF5072_low_12
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 42126469 - 42126687
Alignment:
| Q |
23 |
aggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttcagagatgaca |
122 |
Q |
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| T |
42126469 |
aggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttcagagatgaca |
42126568 |
T |
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| Q |
123 |
gcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaattcttgcaccaagtatctcaaaccagtaat |
222 |
Q |
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| T |
42126569 |
gcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaattcttgcaccaagtatctcaaaccagtaat |
42126668 |
T |
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| Q |
223 |
tcagaaacacagttccttt |
241 |
Q |
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| T |
42126669 |
tcagaaacacagttccttt |
42126687 |
T |
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Back To:
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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 24929798 - 24929980
Alignment:
| Q |
57 |
ggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctg |
156 |
Q |
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| T |
24929798 |
ggatggagacttagaattccattctttacctcatggctttgaaccaaaacaccttctgcaacgacagcttcatctccgattgacaccagagttgggtccg |
24929897 |
T |
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| Q |
157 |
tgatgtcaaccgtgtcaatcaaaactgaggaaccaattcttgcaccaagtatctcaaaccagtaattcagaaacacagttcct |
239 |
Q |
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| T |
24929898 |
tgatgtcaactgtatcaagcagaactgaggatccaattcttgctcccaacatttcaaaccagtactttagaaacactgttcct |
24929980 |
T |
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