View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5072_low_13 (Length: 251)
Name: NF5072_low_13
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072_low_13 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 32844591 - 32844829
Alignment:
| Q |
13 |
attctccggtcaccttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32844591 |
attctccggtcaccttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccc |
32844690 |
T |
|
| Q |
113 |
caacatacaagaccccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgtcgtgtatgtttgcaagtattgttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32844691 |
caacatacaagaccccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgttgtgtatgtttgcaagtattgttt |
32844790 |
T |
|
| Q |
213 |
tgctggccttttccacacttgggccttgcaacgcacgac |
251 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32844791 |
tgctggctttttccacacttgggccttgcaacgcacgac |
32844829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 27744924 - 27745147
Alignment:
| Q |
26 |
cttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccccaacatacaagac |
125 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| || ||||||||| ||| || ||||||||||| |||||||||| ||| || | ||||| |
|
|
| T |
27744924 |
cttgaaaaccaataacagtccattgttgatagtttctcaattcgacaatgtctttatcagaatctaagtacgaccccccaccggctccagcacataagac |
27745023 |
T |
|
| Q |
126 |
cccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgtcgtgtatgtttgcaagtattgttttgctggccttttc |
225 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
27745024 |
cccaccggcactagtagccttcaccctcaccgtcctcatcctatgctttgtggctttcagcattgtgtatctttgcaagtattgctttgcaggcattttc |
27745123 |
T |
|
| Q |
226 |
cacacttgggccttgcaacgcacg |
249 |
Q |
| |
|
|| | ||||||||||| |||||| |
|
|
| T |
27745124 |
catatgtgggccttgcatcgcacg |
27745147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University