View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072_low_14 (Length: 244)
Name: NF5072_low_14
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072_low_14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 32845342 - 32845116
Alignment:
| Q |
18 |
cttgaaaatctatgatcttcttgttgttgcatactcatacgcacatgatgatcatgttgatcaccttcatgtacttgagctctagtgatttcaccaacat |
117 |
Q |
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| T |
32845342 |
cttgaaaatctatgatcttcttgttgttgcatactcatacccacatgatgatcatgttgatcaccttcatgtacttgagctctagtgatttcaccaacat |
32845243 |
T |
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| Q |
118 |
tgtcactttcctctcctctaacatcaatgtgtatgtcaccgcatggtaacgatgtcataccctcttgtgcattaaggttgttattgttgttgttgtggtt |
217 |
Q |
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| T |
32845242 |
tgtcactttcctctcctctaacatcaatgtgtatatcatcgcatggtaacgatgtcataccctcttgcacattaaggttgttattgttgttgttgtggtt |
32845143 |
T |
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| Q |
218 |
gccttccccgtgtttggacatttggtt |
244 |
Q |
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| T |
32845142 |
gccttccccgtgtttggacatttggtt |
32845116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 59 - 244
Target Start/End: Complemental strand, 27745621 - 27745436
Alignment:
| Q |
59 |
cacatgatgatcatgttgatcaccttcatgtacttgagctctagtgatttcaccaacattgtcactttcctctcctctaacatcaatgtgtatgtcaccg |
158 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||| |||| | |||| |||||||||||||||||||||||||| || | ||| | |
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| T |
27745621 |
cacatgatcatcatgttgatcaccttcatgtatttgagctctagtgatctcactagtattgacactttcctctcctctaacatcaatgcgtgtatcattg |
27745522 |
T |
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| Q |
159 |
catggtaacgatgtcataccctcttgtgcattaaggttgttattgttgttgttgtggttgccttccccgtgtttggacatttggtt |
244 |
Q |
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| T |
27745521 |
cacggtaatgaggtcataccctcttgtgcattaacgttgttgttggtgttgttgttgcaacattccccgtgttttgacgtttggtt |
27745436 |
T |
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