View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5072_low_16 (Length: 238)

Name: NF5072_low_16
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5072_low_16
NF5072_low_16
[»] chr1 (9 HSPs)
chr1 (18-222)||(31319345-31319549)
chr1 (114-215)||(27461010-27461112)
chr1 (106-222)||(26102233-26102350)
chr1 (106-221)||(13807540-13807655)
chr1 (106-159)||(15416776-15416829)
chr1 (106-222)||(31313728-31313845)
chr1 (160-222)||(15416849-15416911)
chr1 (107-211)||(34935158-34935262)
chr1 (115-165)||(15850859-15850909)
[»] chr5 (3 HSPs)
chr5 (113-222)||(17695291-17695401)
chr5 (113-222)||(24130804-24130914)
chr5 (116-154)||(25943837-25943875)
[»] chr4 (6 HSPs)
chr4 (122-222)||(32021970-32022069)
chr4 (134-218)||(13275591-13275676)
chr4 (106-221)||(16442079-16442195)
chr4 (106-184)||(10079991-10080069)
chr4 (106-222)||(31859721-31859839)
chr4 (113-216)||(17339642-17339746)
[»] chr8 (6 HSPs)
chr8 (106-219)||(28260110-28260224)
chr8 (106-222)||(13529927-13530043)
chr8 (106-222)||(13619466-13619582)
chr8 (105-216)||(35135241-35135353)
chr8 (105-165)||(12774664-12774724)
chr8 (178-222)||(29291946-29291990)
[»] chr6 (3 HSPs)
chr6 (106-214)||(26499668-26499777)
chr6 (113-222)||(16439634-16439744)
chr6 (134-215)||(32930295-32930376)
[»] chr2 (5 HSPs)
chr2 (111-222)||(24047558-24047671)
chr2 (113-222)||(17862586-17862696)
chr2 (113-219)||(21848903-21849009)
chr2 (114-222)||(18117158-18117267)
chr2 (122-201)||(39730644-39730724)
[»] chr7 (6 HSPs)
chr7 (106-184)||(7326712-7326788)
chr7 (163-222)||(14649672-14649731)
chr7 (98-141)||(2353054-2353097)
chr7 (106-207)||(25706345-25706447)
chr7 (121-214)||(10253577-10253670)
chr7 (177-214)||(12358656-12358693)
[»] chr3 (5 HSPs)
chr3 (106-212)||(21653531-21653640)
chr3 (106-212)||(23908092-23908199)
chr3 (177-214)||(19219104-19219141)
chr3 (125-205)||(26418913-26418994)
chr3 (111-155)||(33577972-33578016)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 31319345 - 31319549
Alignment:
Q  18 ccaacttggaaaataagttgaaaatgcattcttcttgcacataagcgcatggcacatgagacagtagctagagtacggattctacagcttttcgtccttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
T  31319345 ccaacttggaaaataagttgaaaatgcattcttcttgcacataagcgcatggcgcatgagacagtagctagagtacggattctacaacttttcatccttt 31319444  T
Q  118 ttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatcttcatta 217  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31319445 ttcgagcgtttttccatcttgaaatgccttgaaacttgggataaatttccccgacttgcattgtcttcaaaaaacttctaagaaccattgatcttcatta 31319544  T
Q  218 ttcat 222  Q
    |||||    
T  31319545 ttcat 31319549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 27461010 - 27461112
Alignment:
Q  114 ctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaat-ttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatctt 212  Q
    ||||||||||||||||| | ||||||||||| ||| |||||| ||| ||| |||||  ||||| ||||||||| |||| ||| |||||||||||||||||    
T  27461010 ctttttcgagcgttctttcgtcttgaaatgccttggaacttgtgatgaatattcccaaacttgtattgtcttcaaaaaccttttaagaaccattgatctt 27461109  T
Q  213 cat 215  Q
    |||    
T  27461110 cat 27461112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 26102350 - 26102233
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccc-cgacttgcattgtcttcgaaaaacttctaagaacca 204  Q
    ||||||| |||||  |||||||||||  ||||||||| | |||||||||| ||| ||||| || | ||||| ||||||||| |||| ||||||| || ||    
T  26102350 ttttcgttcttttctgagcgttcttcagtcttgaaattccttgaaacttgagatgaattttcctcaacttgtattgtcttcaaaaaccttctaaaaatca 26102251  T
Q  205 ttgatcttcattattcat 222  Q
    |||||||||||| |||||    
T  26102250 ttgatcttcattcttcat 26102233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 13807540 - 13807655
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccat 205  Q
    ||||||||||||||||||||||||    |||| |||||| ||||||||| |||| | ||| ||| ||||| ||| ||||| |||| |||||||||| |||    
T  13807540 ttttcgtcctttttcgagcgttctcttgtcttaaaatgccttgaaacttaggatgatttttcccaacttgtattttcttcaaaaatcttctaagaagcat 13807639  T
Q  206 tgatcttcattattca 221  Q
      ||||||||| ||||    
T  13807640 caatcttcattcttca 13807655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 15416776 - 15416829
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat 159  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||    
T  15416776 ttttcgtcctttttcgagcattcttccgtcttgaaatgccttgaaacttaggat 15416829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 31313845 - 31313728
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccga-cttgcattgtcttcgaaaaacttctaagaacca 204  Q
    ||||| ||| ||||| || |||||||| ||||||||||| ||| ||||| |||| |||||  || | |||| ||||||||| |||| ||| |||||| ||    
T  31313845 ttttcatcccttttcaagtgttcttccgtcttgaaatgccttggaacttaggattaatttttcctaacttgtattgtcttcaaaaaccttataagaatca 31313746  T
Q  205 ttgatcttcattattcat 222  Q
    |||||||||||| |||||    
T  31313745 ttgatcttcattcttcat 31313728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 15416849 - 15416911
Alignment:
Q  160 aaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatcttcattattcat 222  Q
    |||||| ||| ||||||||||||||  |||| ||| ||||||||||||||||||||| |||||    
T  15416849 aaattttcccaacttgcattgtctttaaaaaccttataagaaccattgatcttcattcttcat 15416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 34935158 - 34935262
Alignment:
Q  107 tttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaacttctaagaaccat 205  Q
    |||||| |||||||||| |||| ||| ||||||||||| ||  |||||||||| || ||||||| ||||| ||| ||||| |||| ||| |||||| |||    
T  34935158 tttcgttctttttcgagtgttcatccgtcttgaaatgccttagaacttgggatgaattttccccaacttgtattatcttcaaaaaccttataagaa-cat 34935256  T
Q  206 tgatct 211  Q
    ||||||    
T  34935257 tgatct 34935262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 15850859 - 15850909
Alignment:
Q  115 tttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaattt 165  Q
    |||||||||||||||||| |||| |||||| |||||| ||||||| |||||    
T  15850859 tttttcgagcgttcttccttcttaaaatgccttgaaatttgggatgaattt 15850909  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 17695291 - 17695401
Alignment:
Q  113 cctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaattt-ccccgacttgcattgtcttcgaaaaacttctaagaaccattgatct 211  Q
    |||||||||||||||||||  ||||||||||| ||| ||||| |||| ||||| |||| ||||| ||||||||| |||| ||||||| ||||||||||||    
T  17695291 cctttttcgagcgttcttcggtcttgaaatgccttggaacttaggatgaattttccccaacttgtattgtcttcaaaaaccttctaataaccattgatct 17695390  T
Q  212 tcattattcat 222  Q
    |||||||||||    
T  17695391 tcattattcat 17695401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 24130914 - 24130804
Alignment:
Q  113 cctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatct 211  Q
    |||||||| |||||||||   |||||||||||  || |||||||||| || ||||||| | ||| ||||| ||| |||| ||||||||| |||||||| |    
T  24130914 cctttttctagcgttctttgctcttgaaatgccctggaacttgggatgaattttccccaatttgtattgtattcaaaaaccttctaagatccattgatat 24130815  T
Q  212 tcattattcat 222  Q
    | ||| |||||    
T  24130814 ttattcttcat 24130804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 25943875 - 25943837
Alignment:
Q  116 ttttcgagcgttcttccatcttgaaatgcattgaaactt 154  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  25943875 ttttcgagcgttcttccgtcttgaaatacattgaaactt 25943837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 32022069 - 32021970
Alignment:
Q  122 agcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatcttcattattca 221  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||| ||||||||| |||| ||| |  |||||||||||||||||| ||||    
T  32022069 agcgttcttccatcttgaaatgccttgaaatttgggatgaatttccccaacttgtattgtcttc-aaaacctttttggaaccattgatcttcattcttca 32021971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 13275591 - 13275676
Alignment:
Q  134 tcttgaaatgcattgaaacttgggataaattt-ccccgacttgcattgtcttcgaaaaacttctaagaaccattgatcttcattat 218  Q
    ||||||||||| ||| |||| ||||| ||||| |||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  13275591 tcttgaaatgccttgtaactagggatgaattttccccaacttgtattgtcttcaaaaaacttcaaagaaccattgatcttcattat 13275676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 16442079 - 16442195
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaattt-ccccgacttgcattgtcttcgaaaaacttctaagaacca 204  Q
    |||| |||||||||||||||||||||| |||||||||   ||| ||||| |||||||||| |||| | ||| ||||||||| |||| |||| ||| || |    
T  16442079 tttttgtcctttttcgagcgttcttccgtcttgaaattgcttggaactttggataaatttcccccaaattgtattgtcttcaaaaaccttccaagtacaa 16442178  T
Q  205 ttgatcttcattattca 221  Q
    | |||||||||||||||    
T  16442179 tcgatcttcattattca 16442195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 10079991 - 10080069
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtctt 184  Q
    ||||| ||||||||||||| ||||||||| | ||||||| ||| |||||||||| ||||||||| |||||  |||||||    
T  10079991 ttttcatcctttttcgagcattcttccatttcgaaatgccttggaacttgggatgaatttccccaacttgttttgtctt 10080069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 31859721 - 31859839
Alignment:
Q  106 ttttcgtcctttttcga-gcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgactt-gcattgtcttcgaaaaacttctaagaacc 203  Q
    ||||||||||||||  | |||||||||| ||||||||||| ||| ||||||  |||||||| |   |||| | ||||||||| || | ||||||||||||    
T  31859721 ttttcgtccttttttcacgcgttcttccgtcttgaaatgccttggaacttgaaataaattttcttcactttgtattgtcttcaaataccttctaagaacc 31859820  T
Q  204 attgatcttcattattcat 222  Q
    ||||||||||| |||||||    
T  31859821 attgatcttcaatattcat 31859839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 17339642 - 17339746
Alignment:
Q  113 cctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatct 211  Q
    ||||||||||||| | |||| ||||||||||| || ||| ||||||| || ||| | | ||||| ||||||||| |||| ||| |||||| || ||||||    
T  17339642 cctttttcgagcgcttttccgtcttgaaatgccttaaaatttgggatgaattttacacaacttgaattgtcttcaaaaatcttttaagaatcactgatct 17339741  T
Q  212 tcatt 216  Q
    |||||    
T  17339742 tcatt 17339746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 28260110 - 28260224
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaacttctaagaacca 204  Q
    |||||||| ||||||||||||||||||||||||||||||| || |||||| ||| || ||| ||||||||| ||| ||||| ||||  || ||||||| |    
T  28260110 ttttcgtcttttttcgagcgttcttccatcttgaaatgcaatggaacttgagatgaatttttcccgacttgtattatcttcaaaaactttataagaacta 28260209  T
Q  205 ttgatcttcattatt 219  Q
    |||||||||| ||||    
T  28260210 ttgatcttcaatatt 28260224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 13529927 - 13530043
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccat 205  Q
    ||||| ||||||||| ||||||||| | ||||||||||| ||| || ||||||| ||||||||| ||||| |||| |||  |||| ||| |||||| |||    
T  13529927 ttttcctcctttttcaagcgttctttcgtcttgaaatgccttggaatttgggatgaatttccccaacttgtattgcctttaaaaagcttataagaatcat 13530026  T
Q  206 tgatcttcattattcat 222  Q
    |||| |||||| |||||    
T  13530027 tgattttcattcttcat 13530043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 13619466 - 13619582
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccat 205  Q
    ||||| ||||||||| ||||||||| | ||||||||||| ||| || ||||||| ||||||||| ||||| |||| |||  |||| ||| |||||| |||    
T  13619466 ttttcctcctttttcaagcgttctttcgtcttgaaatgccttggaatttgggatgaatttccccaacttgtattgcctttaaaaagcttataagaatcat 13619565  T
Q  206 tgatcttcattattcat 222  Q
    |||| |||||| |||||    
T  13619566 tgattttcattcttcat 13619582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 35135241 - 35135353
Alignment:
Q  105 cttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaacttctaagaacc 203  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||| ||||| |||| |||||| ||  ||||| | ||||||| |||| || |||| ||||    
T  35135241 cttttcatcctttttcaagcgttcttccatcttgaaatgccttggaacttaggatgaaattttcctaacttgtactgtcttcaaaaacctcctaataacc 35135340  T
Q  204 attgatcttcatt 216  Q
    |||||| ||||||    
T  35135341 attgattttcatt 35135353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 12774664 - 12774724
Alignment:
Q  105 cttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaattt 165  Q
    |||||||||  ||||| ||||||||||| ||||||||||| |||||| ||| ||| |||||    
T  12774664 cttttcgtcgcttttcaagcgttcttccgtcttgaaatgccttgaaatttgagatgaattt 12774724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 29291990 - 29291946
Alignment:
Q  178 ttgtcttcgaaaaacttctaagaaccattgatcttcattattcat 222  Q
    |||||||| || | ||||||||||||||||||||||| |||||||    
T  29291990 ttgtcttcaaagaccttctaagaaccattgatcttcaatattcat 29291946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 26499668 - 26499777
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgac-ttgcattgtcttcgaaaaacttctaagaacca 204  Q
    ||||||| |||||||||||||| |||| ||||| ||||| ||||||||||  || ||||| |   || ||| ||||||||| |||| |||||||||||||    
T  26499668 ttttcgttctttttcgagcgttgttccgtcttgcaatgccttgaaacttgaaatgaattttctttactttgtattgtcttcaaaaaccttctaagaacca 26499767  T
Q  205 ttgatcttca 214  Q
    ||||||||||    
T  26499768 ttgatcttca 26499777  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 16439744 - 16439634
Alignment:
Q  113 cctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccga-cttgcattgtcttcgaaaaacttctaagaaccattgatct 211  Q
    |||||||||||||||||||| |||| |||||  ||| | |||| ||| ||||| ||||| |||| ||| ||||| |||   |||||||||||||||||||    
T  16439744 cctttttcgagcgttcttccgtcttaaaatgtcttggatcttgcgatgaattttcccgaacttgtattttcttcaaaaccattctaagaaccattgatct 16439645  T
Q  212 tcattattcat 222  Q
    ||||| |||||    
T  16439644 tcattcttcat 16439634  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 32930295 - 32930376
Alignment:
Q  134 tcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatcttcat 215  Q
    ||||||||||| ||| |||||| ||| ||||| ||| ||||| ||||||||  |||| |||| ||||| ||||||| |||||    
T  32930295 tcttgaaatgccttggaacttgtgattaattttcccaacttgtattgtctttaaaaaccttccaagaatcattgattttcat 32930376  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 24047671 - 24047558
Alignment:
Q  111 gtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaac-ttctaagaaccattga 208  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||| | || ||||||  ||||| |||||||||  ||| | || | |||||||||||    
T  24047671 gtcctttttcgagcgtttttccatcttgaaatgccttggaacttgggttgaattttccctaacttgtattgtcttcacaaacctttttgagaaccattga 24047572  T
Q  209 tcttcattattcat 222  Q
    |||||||| |||||    
T  24047571 tcttcattcttcat 24047558  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 17862696 - 17862586
Alignment:
Q  113 cctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaattt-ccccgacttgcattgtcttcgaaaaacttctaagaaccattgatct 211  Q
    ||||||||||||||| ||||  | |||||||  ||| |||||||||| ||||| |||| ||||| | ||||||| ||||| ||||||||||||  ||| |    
T  17862696 cctttttcgagcgtttttccgccatgaaatgtcttggaacttgggatgaattttccccaacttgtactgtcttcaaaaaaattctaagaaccaccgattt 17862597  T
Q  212 tcattattcat 222  Q
    ||||| |||||    
T  17862596 tcattcttcat 17862586  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 21848903 - 21849009
Alignment:
Q  113 cctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatctt 212  Q
    |||||||||||||||| |||||||| |||| | |||||| ||||   |  |||| || ||||| ||||| ||| |||| ||| |||||||||||||| ||    
T  21848903 cctttttcgagcgttcatccatcttaaaattccttgaaatttggatgagttttctccaacttgtattgtgttccaaaaccttttaagaaccattgatttt 21849002  T
Q  213 cattatt 219  Q
    |||||||    
T  21849003 cattatt 21849009  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 18117267 - 18117158
Alignment:
Q  114 ctttttcgagcgttcttccatcttgaaatgcattgaaacttggg-ataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatctt 212  Q
    ||||||| |||| |||||||||||||||||| | |  ||||||| | || |||| || ||||| | ||||||  ||||  |||||||||||||| |||||    
T  18117267 ctttttctagcgctcttccatcttgaaatgcctcgggacttgggaagaattttcaccaacttgtactgtcttaaaaaatattctaagaaccatttatctt 18117168  T
Q  213 cattattcat 222  Q
    |||| |||||    
T  18117167 catttttcat 18117158  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 39730724 - 39730644
Alignment:
Q  122 agcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaacttctaagaa 201  Q
    ||||||||||| ||||||||||| ||| |||||||||| || ||||||| |||   ||||||||| |||  ||||||||||    
T  39730724 agcgttcttccgtcttgaaatgccttggaacttgggatgaattttccccaactcttattgtcttcaaaattcttctaagaa 39730644  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 7326712 - 7326788
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtctt 184  Q
    |||||||||||||||| |  ||||| ||||||||||||| ||| ||||||||||||||||  || ||||||||||||||    
T  7326712 ttttcgtcctttttcggg--ttctttcatcttgaaatgcgttggaacttgggataaatttttccaacttgcattgtctt 7326788  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 14649731 - 14649672
Alignment:
Q  163 tttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatcttcattattcat 222  Q
    ||||||| ||||| ||||||||| |||| ||||||| |||||||||||||||||||||||    
T  14649731 tttccccaacttgtattgtcttcaaaaaccttctaataaccattgatcttcattattcat 14649672  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 2353054 - 2353097
Alignment:
Q  98 tctacagcttttcgtcctttttcgagcgttcttccatcttgaaa 141  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||    
T  2353054 tctacagcttttcatcctttttcgagcgatcttccgtcttgaaa 2353097  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 25706447 - 25706345
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaattt-ccccgacttgcattgtcttcgaaaaacttctaagaacca 204  Q
    |||| |||||| ||||||||||||||| | ||||| ||   || |||||||||| ||||| |||| ||||  ||||||||| |||| |||| ||||||||    
T  25706447 tttttgtccttcttcgagcgttcttccgtattgaattgtcatggaacttgggatgaattttccccaacttatattgtcttcaaaaaccttccaagaacca 25706348  T
Q  205 ttg 207  Q
    |||    
T  25706347 ttg 25706345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 10253577 - 10253670
Alignment:
Q  121 gagcgttcttccatcttgaaatgcattgaaacttgggataaatttccccgacttgcattgtcttcgaaaaacttctaagaaccattgatcttca 214  Q
    ||||||||||   |||||| || | |||| ||||||||| ||||||||| ||||| ||||||||| |||| | | |||| | ||||||||||||    
T  10253577 gagcgttctttggtcttgatattccttgagacttgggatgaatttccccaacttgtattgtcttcaaaaaccctataagtatcattgatcttca 10253670  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 12358656 - 12358693
Alignment:
Q  177 attgtcttcgaaaaacttctaagaaccattgatcttca 214  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  12358656 attgtcttcaaaaaccttctaagaaccattgatcttca 12358693  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 21653640 - 21653531
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaa--cttctaagaac 202  Q
    ||||| ||||||||||||||||||||  ||||||||||| || ||||||||||| || ||| ||| ||||  ||||||||  |||||  ||| |||||||    
T  21653640 ttttcatcctttttcgagcgttcttcggtcttgaaatgccttaaaacttgggatgaattttgcccaacttttattgtcttacaaaaaatcttataagaac 21653541  T
Q  203 cattgatctt 212  Q
    ||||||||||    
T  21653540 cattgatctt 21653531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 23908092 - 23908199
Alignment:
Q  106 ttttcgtcctttttcgagcgttcttccatcttgaaatgcattgaaacttgggataaattt-ccccgacttgcattgtcttcgaaaaacttctaagaacca 204  Q
    |||||||| |||||| ||||||||||| | ||||||| | ||| || |||| || ||||| |||| | ||| ||||||||| ||||  |||||| |||||    
T  23908092 ttttcgtcatttttcaagcgttcttcctttttgaaattccttggaatttggaatgaattttccccaatttgtattgtcttcaaaaactttctaaaaacca 23908191  T
Q  205 ttgatctt 212  Q
    ||||||||    
T  23908192 ttgatctt 23908199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 19219104 - 19219141
Alignment:
Q  177 attgtcttcgaaaaacttctaagaaccattgatcttca 214  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  19219104 attgtcttcaaaaaccttctaagaaccattgatcttca 19219141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 26418994 - 26418913
Alignment:
Q  125 gttcttccatcttgaaatgcattgaaacttgggat-aaatttccccgacttgcattgtcttcgaaaaacttctaagaaccat 205  Q
    |||||||||||||||||||| ||| ||| |||||| || ||||||| | ||| ||| ||||  |||| ||||||||||||||    
T  26418994 gttcttccatcttgaaatgccttgcaacatgggatgaattttccccaatttgtattttctttaaaaaccttctaagaaccat 26418913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 33578016 - 33577972
Alignment:
Q  111 gtcctttttcgagcgttcttccatcttgaaatgcattgaaacttg 155  Q
    ||||||||||  |||||||||||||||||||||  ||||||||||    
T  33578016 gtcctttttcatgcgttcttccatcttgaaatgtcttgaaacttg 33577972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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