View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5072_low_4 (Length: 406)

Name: NF5072_low_4
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5072_low_4
NF5072_low_4
[»] chr4 (9 HSPs)
chr4 (21-392)||(11792844-11793218)
chr4 (237-392)||(11678524-11678679)
chr4 (237-392)||(11686803-11686958)
chr4 (230-392)||(11789537-11789699)
chr4 (230-392)||(11699709-11699871)
chr4 (296-392)||(11709162-11709258)
chr4 (68-151)||(26620759-26620846)
chr4 (21-151)||(26290147-26290278)
chr4 (21-151)||(55049836-55049967)
[»] scaffold0294 (1 HSPs)
scaffold0294 (202-392)||(20952-21145)
[»] chr8 (3 HSPs)
chr8 (21-151)||(30369891-30370022)
chr8 (21-151)||(37251314-37251445)
chr8 (21-163)||(23525018-23525161)
[»] chr6 (1 HSPs)
chr6 (21-151)||(20872275-20872406)
[»] chr5 (5 HSPs)
chr5 (21-151)||(4061950-4062081)
chr5 (21-151)||(7333085-7333216)
chr5 (73-151)||(8128634-8128713)
chr5 (21-151)||(29866023-29866154)
chr5 (70-139)||(9047410-9047483)
[»] chr7 (2 HSPs)
chr7 (24-125)||(26247595-26247695)
chr7 (96-168)||(29912365-29912438)
[»] scaffold0119 (1 HSPs)
scaffold0119 (21-151)||(40386-40517)
[»] chr1 (1 HSPs)
chr1 (21-151)||(17006642-17006773)
[»] scaffold0012 (1 HSPs)
scaffold0012 (22-151)||(31174-31304)
[»] chr3 (1 HSPs)
chr3 (72-163)||(19817605-19817697)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 392
Target Start/End: Complemental strand, 11793218 - 11792844
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  11793218 gctatgataccattgttagaccttatgagggagccatcactggtgtggatcaacccatgaaatagagaggaactagacaaatgacaatgataccacatct 11793119  T
Q  121 ttacttaatttttaggtatcacgaaattctaacatgtgcttggtacaaatatctatactatttgtataaaatatgacatattacaaaaactaatcaatgt 220  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  11793118 ttacttaatttttaagtatcacgaaattctaacatgtgcttggtacggatatctatcctacttgtataaaatatgacatattacaaaaactaatcaatgt 11793019  T
Q  221 ctatc---atgagatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaa 317  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11793018 ctatccttatgagatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaa 11792919  T
Q  318 taaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11792918 taaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgaccatctttgccagtaaaatgt 11792844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 237 - 392
Target Start/End: Complemental strand, 11678679 - 11678524
Alignment:
Q  237 cctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatcaagatgtg 336  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| |||||    
T  11678679 cctttgtgattataaatgtaagattttgcaaagtaaacgaacaaagtaaaccccatcaaacttaatccagcaagcaaccaataaaagtaatcaaaatgtg 11678580  T
Q  337 ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11678579 ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccactaaaatgt 11678524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 237 - 392
Target Start/End: Complemental strand, 11686958 - 11686803
Alignment:
Q  237 cctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatcaagatgtg 336  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| |||||    
T  11686958 cctttgtgattataaatgtaagattttgcaaagtaaacgaacaaagtaaaccccatcaaacttaatccagcaagcaaccaataaaagtaatcaaaatgtg 11686859  T
Q  337 ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11686858 ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccactaaaatgt 11686803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 230 - 392
Target Start/End: Complemental strand, 11789699 - 11789537
Alignment:
Q  230 gatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatca 329  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  11789699 gatgacacctttatgattataaatgtaagattttgcaaagtaaatgaacaaagtaaacccaatgacacttaatccagaaagtagccaataaaagtaatca 11789600  T
Q  330 agatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgt 392  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  11789599 agatgtgtcttattgatattgtcacaaaaccaactatcatgtccatctttgccactaaaatgt 11789537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 230 - 392
Target Start/End: Complemental strand, 11699871 - 11699709
Alignment:
Q  230 gatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatca 329  Q
    ||||| || ||| |||||||||||||||||||||||||||||||  |||||||||||||| |  ||||||||||||||||||| ||||||||||||||||    
T  11699871 gatgacacttttatgattataaatgtaagattttgcaaagtaaacaaacaaagtaaaccctaacacacttaatccagcaagtaaccaataaaagtaatca 11699772  T
Q  330 agatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgt 392  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  11699771 agatgtgccttattgatattgtcacaaaaccaactttcatgaccatctttgccagtaaaatgt 11699709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 296 - 392
Target Start/End: Complemental strand, 11709258 - 11709162
Alignment:
Q  296 acttaatccagcaagtatccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgt 392  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11709258 acttaatccagcaagcaaccaataaaagtaatcaaaatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccactaaaatgt 11709162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 26620846 - 26620759
Alignment:
Q  68 gatcaacccattaaacagagaggaactagacaaat----gacaatgataccacatctttacttaatttttaggtatcacgaaattcta 151  Q
    ||||||||||||||||| |||||||||||||||||    |||||||||   |||||||||||||||||||| ||||||||||||||||    
T  26620846 gatcaacccattaaacatagaggaactagacaaattaatgacaatgatttaacatctttacttaatttttaagtatcacgaaattcta 26620759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 26290147 - 26290278
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||| | ||||| |||| ||||| |||  |  |||||  | |||||  |||||||  ||| |||||||||| ||||||| || ||||    
T  26290147 gctatgataccattgttgggccttacgagggagccaacactggcatggattgatccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 26290246  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  26290247 ttacttaatattttaaatatcacgaaattcta 26290278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 55049967 - 55049836
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||| | ||||| |||| ||||| |||  |  |||||  |||||||  |||||||  ||| |||||||||| ||||||| || ||||    
T  55049967 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 55049868  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  ||||| |||||||||    
T  55049867 ttacttaatattttaaatatcatgaaattcta 55049836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 202 - 392
Target Start/End: Complemental strand, 21145 - 20952
Alignment:
Q  202 tacaaaaactaatcaatgtctatcat---gagatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacact 298  Q
    |||||||||||||||||| ||||| |   | ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21145 tacaaaaactaatcaatgactatccttgtgtgatgatacctttgtggttataaatgtaagattttgcaaagtaaataaacaaagtaaaccccatgacact 21046  T
Q  299 taatccagcaagtatccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgt 392  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| || ||||||||    
T  21045 taatccagcaagtagccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaactatcatgaccatctttggcactaaaatgt 20952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 30369891 - 30370022
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||| | ||||| |||| ||||| |||  |  |||||  |||||||  |||||||  ||| |||||||||| ||||||| || ||||    
T  30369891 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 30369990  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  30369991 ttacttaatattttaaatatcacgaaattcta 30370022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 37251314 - 37251445
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||| | ||||| |||| ||||| |||  |  |||||  |||||||  |||||||  ||| |||||||||| ||||||| || ||||    
T  37251314 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 37251413  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  37251414 ttacttaatattttaaatatcacgaaattcta 37251445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 23525161 - 23525018
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||| ||||| | ||||| |||  ||||| ||| ||  |||||  |||||||  |||||||  ||| | |||||||| ||||||| || ||||    
T  23525161 gctatgataccgttgttgggccttacgagagagccaacactagcatggattgacccattgcacagagaacaaccaaacaaatgaaaatgatatcaaatct 23525062  T
Q  121 ttacttaat-ttttaggtatcacgaaattctaacatgtgcttgg 163  Q
    ||| ||||| |||||  |||||||||||||||||  ||||||||    
T  23525061 ttaattaatattttaaatatcacgaaattctaacccgtgcttgg 23525018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 20872406 - 20872275
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||||| ||||| |||| ||||| |||  |  ||||| ||||||||  ||| |||  ||| |||||||||| ||||||| || || |    
T  20872406 gctatgataccattgttaggccttacgagggagccaacactggcatggattaacccattgcacaaagaacaaccagacaaatgagaatgatatcaaatat 20872307  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  20872306 ttacttaatattttaaatatcacgaaattcta 20872275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 4062081 - 4061950
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||| | ||||| |||| ||||| |||  |  |||||  |||||||  |||||||  ||| |||||||||| ||||||| || ||||    
T  4062081 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 4061982  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  4061981 ttacttaatattttaaatatcacgaaattcta 4061950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 7333085 - 7333216
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||| ||||||||||| | ||||| |||| ||||| |||  |  |||||  |||||||  |||||||  ||| |||||||||| ||||||| || ||||    
T  7333085 gctataataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaatgagaatgatatcaaatct 7333184  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  7333185 ttacttaatattttaaatatcacgaaattcta 7333216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 8128634 - 8128713
Alignment:
Q  73 acccattaaacagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta 151  Q
    |||||||  |||||||  ||| |||||||||| ||||||| || ||||||||||||| |||||  |||||||||||||||    
T  8128634 acccattgcacagagaacaaccagacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta 8128713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 29866023 - 29866154
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||| | ||||| |||| ||||| |||  |  |||||  |||||||  ||| |||  ||| |||||||||| ||||||| || ||||    
T  29866023 gctatgataccattgttgggccttacgagggagccaacactggcatggattgacccattgcacaaagaacaaccagacaaatgaaaatgatatcaaatct 29866122  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||| ||||| |||||  |||||||||||||||    
T  29866123 ttaattaatattttaaatatcacgaaattcta 29866154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 9047483 - 9047410
Alignment:
Q  70 tcaacccattaaacagagaggaactagacaaat----gacaatgataccacatctttacttaatttttaggtat 139  Q
    |||||| |||||| |||||||||||| ||||||    ||||||||||| || |||||||| |||||||| ||||    
T  9047483 tcaaccaattaaatagagaggaactaaacaaattaatgacaatgatacaacgtctttactcaatttttaagtat 9047410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 26247595 - 26247695
Alignment:
Q  24 atgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatcttta 123  Q
    |||||||||| ||||||||||||||||  |||| |||  ||||||||||||  ||| || |||||| ||| | |||||||||||| ||| ||||||||||    
T  26247595 atgataccatcgttagaccttatgaggg-gccaacactggtgtggatcaactaattgaatagagagcaaccaaacaaatgacaataataacacatcttta 26247693  T
Q  124 ct 125  Q
    ||    
T  26247694 ct 26247695  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 29912438 - 29912365
Alignment:
Q  96 gacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattctaacatgtgcttggtacaa 168  Q
    ||||||||| ||||||| || ||||||||||||| |||||  ||||||||||||||| |  |||||||| ||||    
T  29912438 gacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattctagctcgtgcttggcacaa 29912365  T

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Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 40517 - 40386
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||| ||||||||| ||||| |||| ||||| |||  |  |||||  |||||||  |||||||  ||| |||||||| | ||||||| || ||||    
T  40517 gctatgatatcattgttaggccttacgagggagccaacactggcatggattgacccattgcacagagaacaaccagacaaataagaatgatatcaaatct 40418  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  40417 ttacttaatattttaaatatcacgaaattcta 40386  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 17006642 - 17006773
Alignment:
Q  21 gctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatct 120  Q
    ||||||||||||||||| | ||||| |||| ||||| |||     |||||  |||||||  | |||||  ||| |||||||||| ||||||| || ||||    
T  17006642 gctatgataccattgttgggccttacgagggagccaacactgacatggattgacccattgcagagagaacaaccagacaaatgagaatgatatcaaatct 17006741  T
Q  121 ttacttaat-ttttaggtatcacgaaattcta 151  Q
    ||||||||| |||||  |||||||||||||||    
T  17006742 ttacttaatattttaaatatcacgaaattcta 17006773  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 31174 - 31304
Alignment:
Q  22 ctatgataccattgttagaccttatgaggaagccatcacaagtgtggatcaacccattaaacagagaggaactagacaaatgacaatgataccacatctt 121  Q
    ||||||||||||| || | |||||||||| ||||| |||  |  |||||  |||||||  |||||||  | | |||||||||| ||||||| || |||||    
T  31174 ctatgataccattcttgggccttatgagggagccaacactggcatggattgacccattgcacagagaacatccagacaaatgaaaatgatatcaaatctt 31273  T
Q  122 tacttaat-ttttaggtatcacgaaattcta 151  Q
    || ||||| |||||  |||||||||||||||    
T  31274 taattaatattttaaatatcacgaaattcta 31304  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 19817605 - 19817697
Alignment:
Q  72 aacccattaaacagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattctaacatgtgcttgg 163  Q
    ||||||||  |||||||  ||| |||||||||| ||||||| || ||||||| ||||| |||||   ||||||||||||||||  ||||||||    
T  19817605 aacccattgcacagagaacaaccagacaaatgaaaatgatatcaaatctttaattaatattttaaacatcacgaaattctaacccgtgcttgg 19817697  T

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