View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5073-Insertion-1 (Length: 1034)

Name: NF5073-Insertion-1
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5073-Insertion-1
NF5073-Insertion-1
[»] chr7 (36 HSPs)
chr7 (176-1034)||(39236754-39237633)
chr7 (40-178)||(47822014-47822152)
chr7 (28-172)||(41873432-41873576)
chr7 (28-178)||(36738487-36738642)
chr7 (28-170)||(42815598-42815740)
chr7 (89-177)||(39237696-39237784)
chr7 (59-178)||(557404-557523)
chr7 (56-164)||(45508521-45508629)
chr7 (120-178)||(43930047-43930105)
chr7 (60-181)||(17878712-17878833)
chr7 (30-146)||(16082817-16082933)
chr7 (65-180)||(25695912-25696027)
chr7 (42-156)||(48745238-48745352)
chr7 (56-145)||(29310446-29310535)
chr7 (28-91)||(25980747-25980810)
chr7 (41-100)||(43930070-43930129)
chr7 (41-100)||(47821990-47822049)
chr7 (56-172)||(46947787-46947901)
chr7 (33-91)||(2520636-2520694)
chr7 (74-172)||(3473261-3473359)
chr7 (69-138)||(3399023-3399092)
chr7 (14-91)||(17354646-17354723)
chr7 (34-91)||(27949277-27949334)
chr7 (28-77)||(27949408-27949457)
chr7 (28-172)||(13919778-13919922)
chr7 (31-91)||(13919902-13919962)
chr7 (31-91)||(19840883-19840943)
chr7 (31-91)||(26703438-26703498)
chr7 (28-75)||(31959992-31960039)
chr7 (41-100)||(41873547-41873606)
chr7 (41-100)||(46947872-46947931)
chr7 (42-180)||(19494369-19494507)
chr7 (31-85)||(22190066-22190120)
chr7 (31-77)||(27888417-27888463)
chr7 (40-77)||(6580010-6580047)
chr7 (40-77)||(48374447-48374484)
[»] chr1 (20 HSPs)
chr1 (28-178)||(24886072-24886222)
chr1 (28-178)||(29068113-29068263)
chr1 (69-178)||(19078946-19079055)
chr1 (69-178)||(19126834-19126943)
chr1 (60-171)||(16173050-16173160)
chr1 (28-171)||(43275773-43275916)
chr1 (109-178)||(11709655-11709724)
chr1 (71-162)||(932030-932121)
chr1 (31-91)||(11430442-11430502)
chr1 (31-91)||(32848702-32848762)
chr1 (28-180)||(43161147-43161299)
chr1 (45-100)||(24886052-24886107)
chr1 (33-132)||(27464709-27464807)
chr1 (28-91)||(41095728-41095791)
chr1 (31-172)||(11135740-11135881)
chr1 (31-91)||(26980381-26980441)
chr1 (31-91)||(41917996-41918056)
chr1 (40-91)||(11135861-11135912)
chr1 (31-85)||(11430568-11430622)
chr1 (46-107)||(31602075-31602136)
[»] chr4 (25 HSPs)
chr4 (28-178)||(37306402-37306552)
chr4 (28-171)||(51475160-51475303)
chr4 (28-178)||(43480277-43480427)
chr4 (28-177)||(31699475-31699624)
chr4 (28-178)||(6540258-6540408)
chr4 (28-178)||(30111802-30111951)
chr4 (27-107)||(39401308-39401388)
chr4 (84-178)||(50251505-50251599)
chr4 (28-121)||(21776506-21776597)
chr4 (30-128)||(27362642-27362740)
chr4 (69-166)||(21710558-21710654)
chr4 (28-75)||(6011579-6011626)
chr4 (40-91)||(51206165-51206216)
chr4 (40-166)||(7283169-7283294)
chr4 (28-78)||(37315561-37315611)
chr4 (30-100)||(41095230-41095300)
chr4 (31-172)||(42862459-42862600)
chr4 (87-140)||(51823131-51823184)
chr4 (47-99)||(23716369-23716421)
chr4 (28-91)||(8108954-8109017)
chr4 (41-100)||(31699590-31699649)
chr4 (40-87)||(39810534-39810581)
chr4 (112-166)||(16650535-16650589)
chr4 (31-77)||(39471292-39471338)
chr4 (28-117)||(51902640-51902729)
[»] chr8 (16 HSPs)
chr8 (28-178)||(6580864-6581013)
chr8 (28-178)||(28700588-28700738)
chr8 (58-178)||(33440530-33440650)
chr8 (28-170)||(30085374-30085516)
chr8 (42-118)||(16896338-16896414)
chr8 (63-178)||(34434948-34435063)
chr8 (56-178)||(45057933-45058055)
chr8 (73-178)||(12212157-12212262)
chr8 (73-178)||(12456585-12456690)
chr8 (31-137)||(35689481-35689587)
chr8 (28-75)||(24683569-24683616)
chr8 (41-100)||(33440615-33440674)
chr8 (31-77)||(16983529-16983575)
chr8 (40-77)||(5980014-5980051)
chr8 (24-97)||(9907223-9907296)
chr8 (42-91)||(35689602-35689651)
[»] chr3 (23 HSPs)
chr3 (28-178)||(54186925-54187075)
chr3 (28-178)||(13639437-13639587)
chr3 (69-172)||(38602849-38602952)
chr3 (28-177)||(48543139-48543288)
chr3 (27-178)||(50320448-50320598)
chr3 (30-170)||(20909291-20909431)
chr3 (30-178)||(29235682-29235832)
chr3 (31-91)||(37600249-37600309)
chr3 (40-91)||(24748917-24748968)
chr3 (33-100)||(48543254-48543321)
chr3 (39-100)||(13639411-13639472)
chr3 (41-102)||(29235658-29235719)
chr3 (31-91)||(38928007-38928067)
chr3 (28-100)||(54187040-54187112)
chr3 (72-171)||(28215767-28215866)
chr3 (28-91)||(54141012-54141075)
chr3 (31-77)||(24734840-24734886)
chr3 (82-148)||(26223190-26223256)
chr3 (42-100)||(38602820-38602878)
chr3 (31-77)||(41451894-41451940)
chr3 (31-77)||(52951377-52951423)
chr3 (40-85)||(27243055-27243100)
chr3 (39-92)||(54727945-54727998)
[»] chr2 (23 HSPs)
chr2 (28-172)||(5139966-5140110)
chr2 (40-178)||(7709781-7709918)
chr2 (28-178)||(864096-864246)
chr2 (28-148)||(6951762-6951882)
chr2 (28-165)||(14960644-14960781)
chr2 (72-178)||(37285155-37285261)
chr2 (73-178)||(8503809-8503913)
chr2 (79-171)||(42635349-42635441)
chr2 (69-172)||(23403726-23403829)
chr2 (28-91)||(37228496-37228559)
chr2 (28-148)||(35714472-35714589)
chr2 (31-91)||(37398933-37398993)
chr2 (31-91)||(42182890-42182950)
chr2 (28-91)||(27968916-27968979)
chr2 (28-91)||(28091608-28091671)
chr2 (28-91)||(28101840-28101903)
chr2 (31-91)||(28898156-28898216)
chr2 (40-91)||(1107048-1107099)
chr2 (31-85)||(6315786-6315840)
chr2 (56-162)||(9132265-9132371)
chr2 (92-178)||(23494325-23494410)
chr2 (110-148)||(37195269-37195307)
chr2 (40-77)||(12989326-12989363)
[»] chr5 (23 HSPs)
chr5 (28-178)||(30892142-30892292)
chr5 (28-178)||(42958473-42958623)
chr5 (28-177)||(5990515-5990664)
chr5 (28-161)||(17190605-17190738)
chr5 (82-178)||(18237186-18237282)
chr5 (31-91)||(4959279-4959339)
chr5 (80-164)||(10393768-10393852)
chr5 (28-85)||(3899985-3900040)
chr5 (28-178)||(28436399-28436549)
chr5 (23-172)||(26072096-26072245)
chr5 (94-171)||(41020240-41020317)
chr5 (31-91)||(40971572-40971632)
chr5 (30-181)||(1205592-1205742)
chr5 (31-172)||(42224629-42224770)
chr5 (31-91)||(26072225-26072285)
chr5 (40-91)||(4959400-4959451)
chr5 (41-100)||(5990630-5990689)
chr5 (28-75)||(34818324-34818371)
chr5 (58-128)||(40699505-40699575)
chr5 (28-172)||(6198529-6198671)
chr5 (40-77)||(28490730-28490767)
chr5 (28-73)||(40926184-40926229)
chr5 (40-77)||(41105578-41105615)
[»] chr6 (10 HSPs)
chr6 (28-178)||(32439511-32439661)
chr6 (28-172)||(7447562-7447706)
chr6 (31-91)||(19090334-19090394)
chr6 (33-100)||(32439479-32439546)
chr6 (27-148)||(3928951-3929072)
chr6 (40-89)||(10060983-10061032)
chr6 (40-164)||(17221519-17221643)
chr6 (30-73)||(6861419-6861462)
chr6 (31-90)||(19090213-19090272)
chr6 (31-128)||(6531380-6531477)
[»] scaffold0922 (1 HSPs)
scaffold0922 (87-169)||(709-791)


Alignment Details
Target: chr7 (Bit Score: 708; Significance: 0; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 176 - 1034
Target Start/End: Complemental strand, 39237633 - 39236754
Alignment:
Q  176 ttaaaggttagtt--ttagtgcacaacagataaattttacatgaccaataaatctcatcactggttcagattgaatatgatgagattttgtacatgcaat 273  Q
    |||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39237633 ttaaaggttagttctttagtgcacaagagataacttttacatgaccaataaatctcatcactggttcagattgaatatgatgagattttgtacatgcaat 39237534  T
Q  274 attactttacttgtccacattgaactaaataaactgaagagttactattggagtaactttatatgttaataatgacactcgttgttatgcttttgtttat 373  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  39237533 attactt-acttgtccacattgaactaaataaactgaagagttactattggagtaactttatat--taataatgacactcgctgttatgcttttgtttat 39237437  T
Q  374 tg---tacgttctaatttcattaagctaatg----------------gtgagtggggaagattgcccttataccatgaccaaatgtccaatgaagaatca 454  Q
    ||   |||||||||||||||||||||||||                 ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39237436 tgctgtacgttctaatttcattaagctaatctgctaatgtgacgctagtgagtggggaagat-gcccttataccatgaccaaatgtccaatgaagaatca 39237338  T
Q  455 ctatttcaaaacaaactcttcgctctcaactca--acatttttctgcaactaatcagtcattagcaccagaactcatgaatccattaagttctctgcaat 552  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39237337 ctatttcaaaacaaactcttctctctcaactcataacatttttctgcaactaatcagtcattagcaccagaactcatgaatccattaagttctctgcaat 39237238  T
Q  553 taagtacatggttcttcagcatcctccctactacactcatttaaaacaaacttcacaatattcccatgaaataaaatgtaaaactcacaatttaatcaat 652  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39237237 taagtacagggttcctcagcatcctccctactgcactcatttaaaacaaacttcacaatattcccatgaaataaaatgtaaaactcacaatttaattaat 39237138  T
Q  653 ttcacatggatttcattaaccattagtgctaaatagcatgccttaatatcttgaatgccaaaacaaaatatattccttgaaagtccaaacaaaatataaa 752  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39237137 ttcacatggatttcattaaccattagtgctacatagcatgccttaatatcttgaatgccaaaacaaaatatataccttgaaagtccaaacaaaatataaa 39237038  T
Q  753 ttcagtagaaatcctgtacaaaatagaccagatcttctgcaaataaacaccctatttaaaacggacaacatatcagctaacattttagctaacaaaagca 852  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39237037 ttcagtagaaatcctgtacaaaatagaccagatcttctgcaaataaacaccctatttaaaacggacaacatatcagctaacattttagctaacaaaagca 39236938  T
Q  853 tgcaatttaaatgcactaattgactccagaatccacatgtgaccaacagttgaacagcctattaaaggatggatggac-aaacatcggctacggagtgca 951  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39236937 tgcaatttaaatgcactaattgactccagaatccacatgtgaccaacagttgaacagcctattaaaggatggatggacaaaacatcggctacggagtgca 39236838  T
Q  952 ttttagctaacaaaaggctgcaatttgcatgcagcaattgactccagaatccacgtgtgaccagcagta-tggcagttaaattc 1034  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39236837 ttttagctaacaaaaggctgcaatttgcatgcagcaattgactccagaatccacgtgtgaccagcagtattggcagttaaattc 39236754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 47822152 - 47822014
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtgg 139  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||| ||||||||||    
T  47822152 aacactctctttcaagcactctctctaacactcactcttctattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtgtgg 47822053  T
Q  140 tacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |||||||||  | ||||||||||| |||||||| |||||    
T  47822052 tacccacatggatttcacccaatataagagtgagtgtta 47822014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 41873432 - 41873576
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||  |||||   ||||||||| | ||||||    
T  41873432 agaaatgctaggaacactctctttctagcactctctctaacactcacttttttattgggtgaaactcatgtgagtctcatcactttatgtgggttccatt 41873531  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    |  |||||||||||||||||| |||||||||||||||||||||||    
T  41873532 tctaatgtgtggtacccacatgaacttcacccaataaaagagtga 41873576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 36738642 - 36738487
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  36738642 agaaatgttaagaacactctctttttagcactctttctaacactcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatt 36738543  T
Q  128 ttcaatg-----tgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||| |     |||||||||| ||| || ||||| |||||| |||||||||||||    
T  36738542 tccaacgtgtgttgtggtacccgcatgaatttcactcaataagagagtgaatgtta 36738487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 42815740 - 42815598
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| || |||||||| ||| |||||| ||  |||| |||||||||||||||| ||||||  ||||||| |  |||||||    
T  42815740 agaaatgctaggaacactctctttctaacactctctttaacactcaccctcttattaggtgaaactcatgtgggtctcaccactttatggggaatccatt 42815641  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagt 170  Q
    ||||||||| ||||||||||| || |||||||||||| |||||    
T  42815640 ttcaatgtgcggtacccacatgaatttcacccaataacagagt 42815598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 39237784 - 39237696
Alignment:
Q  89 aaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtt 177  Q
    |||||||||||| ||||||  |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39237784 aaactcatgtgggtctcaccactttatatgggatccatttccaatgtgtggtacccacataaacttcacccaataaaagagtgagtgtt 39237696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 557404 - 557523
Alignment:
Q  59 tctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacc 158  Q
    ||||||||| ||||| |  ||||||||||||||||||||||| ||||||  ||||||||| |||||||||| |||||||| ||||||||| || |||| |    
T  557404 tctctctaacactcattaatctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatc 557503  T
Q  159 caataaaagagtgaatgtta 178  Q
    |||||| ||||||| |||||    
T  557504 caataagagagtgagtgtta 557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 45508521 - 45508629
Alignment:
Q  56 cactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttc 155  Q
    |||||||||||| ||||| |||||||||||||||||| || |||| ||||||  ||||| ||| |||||||| |||||||||  ||||||||| || |||    
T  45508521 cactctctctaacactcattcttctattgggtgaaacccacgtgggtctcaccactttacgtgggatccattctcaatgtgtcatacccacatgaatttc 45508620  T
Q  156 acccaataa 164  Q
     ||||||||    
T  45508621 gcccaataa 45508629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 43930047 - 43930105
Alignment:
Q  120 gatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  43930047 gatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgtta 43930105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 17878833 - 17878712
Alignment:
Q  60 ctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcaccc 159  Q
    ||||| || ||||| ||| ||||| | |||||||||||| ||||||||  ||||||||| |||| ||||  |||||||| ||||||||| |  |||||||    
T  17878833 ctctccaacactcattctcctattagctgaaactcatgtcgatctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcaccc 17878734  T
Q  160 aataaaagagtgaatgttaaag 181  Q
    ||||| ||||| ||||||||||    
T  17878733 aataagagagtaaatgttaaag 17878712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 16082933 - 16082817
Alignment:
Q  30 aaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatttt 129  Q
    |||||||| ||||| ||| | | ||||||||| ||||||| ||||||| ||||| ||||||| |||||||| ||||||  |||||||||  ||||| ||     
T  16082933 aaatgctaggaacattctttctctagcactctttctaatattcactctgctattaggtgaaattcatgtgggtctcacctctttatgtggaatccacttc 16082834  T
Q  130 caatgtgtggtacccac 146  Q
    |||| ||||||||||||    
T  16082833 caatatgtggtacccac 16082817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 25696027 - 25695912
Alignment:
Q  65 taatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataa 164  Q
    ||||||||||  || ||||||||||||||||||||||||||||   |||||||||| |||||||  ||| |||||||  | ||| || ||||  ||||||    
T  25696027 taatactcacatttttattgggtgaaactcatgtggatctcaccattttatgtgaggtccatttctaatatgtggtattcgcatgaatttcatacaataa 25695928  T
Q  165 aagagtgaatgttaaa 180  Q
    |||| |||||||||||    
T  25695927 aagattgaatgttaaa 25695912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 48745238 - 48745352
Alignment:
Q  42 cactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggta 141  Q
    ||||||||||||| || ||||||||| | |||||||  |||||||| |||  ||||||| |||||    |||||||| ||||||||| ||||||||||||    
T  48745238 cactctctttttaacattctctctaacattcactctcttattgggtcaaatccatgtgggtctcatcaatttatgtgggatccatttgcaatgtgtggta 48745337  T
Q  142 cccacataaacttca 156  Q
     ||||||||| ||||    
T  48745338 tccacataaatttca 48745352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 29310446 - 29310535
Alignment:
Q  56 cactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtaccca 145  Q
    |||||| ||||| ||||||| || ||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||  |||||| |||||    
T  29310446 cactctttctaacactcacttttttattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccatagtgtgggaccca 29310535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 25980747 - 25980810
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||||| ||||||||| ||| || |||||||||||| ||||||||||||||||| |||||    
T  25980747 agaaatgctaggaacactctatttctaacactctctctaaaactcactcttctattggatgaaa 25980810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 43930129 - 43930070
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||| || |||||||||||| |||||||||| |||||||||||| ||||||||    
T  43930129 acactctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgg 43930070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 47821990 - 47822049
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||||||  |||||||    
T  47821990 acactctctttctagcactctctctaacactcactcttatattgggtgaaatccatgtgg 47822049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 46947787 - 46947901
Alignment:
Q  56 cactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttc 155  Q
    |||||||||||||||| |||||| || |||||||||| ||||||| ||||||  ||||||| | ||| ||||||||| |||||| | |||||| |  |||    
T  46947787 cactctctctaatacttactctttta-tgggtgaaacccatgtgggtctcaccactttatgcgggatgcattttcaaagtgtgg-aaccacatgagtttc 46947884  T
Q  156 acccaataaaagagtga 172  Q
    |||| |||| |||||||    
T  46947885 accctataagagagtga 46947901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 2520636 - 2520694
Alignment:
Q  33 tgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||| |||||||||||||| | ||||||||| || |||||||||| ||||||||||||    
T  2520636 tgctaggaacactctcttttcaacactctctccaacactcactcttttattgggtgaaa 2520694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 3473359 - 3473261
Alignment:
Q  74 ctcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    |||||||||| ||||||||| |||||  ||||||| ||||||||| |||| |||||||| |||| |||| || ||  | |||||  |||||||||||||    
T  3473359 ctcttctattaggtgaaactaatgtgagtctcactactttatgtgcgatcaattttcaaagtgttgtactcatatggatttcacttaataaaagagtga 3473261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 3399023 - 3399092
Alignment:
Q  69 actcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtg 138  Q
    ||||||||| ||||  |||||||||||||||| ||||||  |||||||| ||||  ||||||||||||||    
T  3399023 actcactctcctatatggtgaaactcatgtgggtctcaccactttatgtaagatttattttcaatgtgtg 3399092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 17354723 - 17354646
Alignment:
Q  14 atatataaatttaaagaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||| |||||| || |||||||  |||||||| |||| |||||||||||||| ||||| |||| |||||| |||||    
T  17354723 atatattaatttagaggaatgctagcaacactcttttttgagcactctctctaacactcattcttttattggatgaaa 17354646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 27949277 - 27949334
Alignment:
Q  34 gctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||| ||||||| ||||||| |||||||||||| |||||||||| |||||| |||||    
T  27949277 gctaacaacactcactttttaacactctctctaacactcactcttgtattggatgaaa 27949334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 27949457 - 27949408
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactct 77  Q
    ||||||||||  ||||||||||||| | ||||||||||||||||||||||    
T  27949457 agaaatgctagcaacactctcttttgaacactctctctaatactcactct 27949408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 13919778 - 13919922
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||||||  ||||||||||||| |||||||||||||  |||| ||| | ||||||||||||   ||||   || |||  ||||||||| | ||||||    
T  13919778 agaaatgctagcaacactctcttttgagcactctctctagcactcgctcatttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatt 13919877  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    ||||| |||| |  || ||||  | ||||||||||||| ||||||    
T  13919878 ttcaaagtgtaggtcctacattgatttcacccaataaatgagtga 13919922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 13919962 - 13919902
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  ||||||||||||| |||||||||||||  |||||||| | ||||||||||||    
T  13919962 aatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaa 13919902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 19840883 - 19840943
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  |||||||| |||| |||||||||||||  |||||||||| ||||||||||||    
T  19840883 aatgctagcaacactctattttgagcactctctctagcactcactcttttattgggtgaaa 19840943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 26703438 - 26703498
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  ||||||||||| | |||||||||||||  |||||||||| ||||||||||||    
T  26703438 aatgctagcaacactctcttctgagcactctctctagcactcactcttttattgggtgaaa 26703498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 31960039 - 31959992
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcact 75  Q
    ||||||||||| ||||||||||||| |||||||||||||  |||||||    
T  31960039 agaaatgctaacaacactctcttttgagcactctctctagcactcact 31959992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 41873606 - 41873547
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||| ||  |||||||||||| ||||||||| |||||||||||  ||||||||    
T  41873606 acactctctttctaatactctctctaattctcactcttttattgggtgaagttcatgtgg 41873547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 46947931 - 46947872
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||| ||  ||||||| |||||||||||||  ||| |||||||||||||||||    
T  46947931 acactctctttctaagactctctataatactcactctcttatagggtgaaactcatgtgg 46947872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 19494507 - 19494369
Alignment:
Q  42 cactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggta 141  Q
    ||||||||||| || ||| |||||| ||||||||||| ||||||||||||   ||||   || |||  ||||||||| | ||||||||||| |||| |      
T  19494507 cactctcttttgagtactttctctagtactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtagat 19494408  T
Q  142 cccacataaacttcacccaataaaagagtgaatgttaaa 180  Q
    || ||||  | ||||||||||||||  |||| |||||||    
T  19494407 cctacattgatttcacccaataaaaatgtgagtgttaaa 19494369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 22190120 - 22190066
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgg 85  Q
    |||||||| ||||||||||||| | ||| ||||||||||||||||| | ||||||    
T  22190120 aatgctaacaacactctcttttgaacaccctctctaatactcactcgtttattgg 22190066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 27888463 - 27888417
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactct 77  Q
    |||||||  ||||||||||||| |||||||||||||| |||||||||    
T  27888463 aatgctagcaacactctcttttgagcactctctctaacactcactct 27888417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 6580010 - 6580047
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactct 77  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  6580010 aacactctcttttgaacactctctctaatactcactct 6580047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 48374447 - 48374484
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactct 77  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  48374447 aacactctcttttgaacactctctctaatactcactct 48374484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 4e-53; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 24886222 - 24886072
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||| |||| |||    
T  24886222 agaaatgctaagaacactctctttctagcactctctctaacactcactctcctattgggtgaaactcatgtgggtctcaccgctttatgtgggatctatt 24886123  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||||||||||||||||| || |||||||||||||||||||| |||||    
T  24886122 tacaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgtta 24886072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 29068263 - 29068113
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||   |||||||| |||| |||    
T  29068263 agaaatgctaggaacactctctttctagcactctctctaacactcactctcctattggatgaaactcatgtgggtctcaccattttatgtgggatcaatt 29068164  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||||||||||||||||   | |||||||||||||| ||||| |||||    
T  29068163 tccaatgtgtggtacccacacgtatttcacccaataaaatagtgagtgtta 29068113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 19079055 - 19078946
Alignment:
Q  69 actcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaaga 168  Q
    ||||||||| |||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||| ||| |  |||||||||||| |||    
T  19079055 actcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagaga 19078956  T
Q  169 gtgaatgtta 178  Q
    |||| |||||    
T  19078955 gtgagtgtta 19078946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 19126943 - 19126834
Alignment:
Q  69 actcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaaga 168  Q
    ||||||||| |||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||| ||| |  |||||||||||| |||    
T  19126943 actcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagaga 19126844  T
Q  169 gtgaatgtta 178  Q
    |||| |||||    
T  19126843 gtgagtgtta 19126834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 16173160 - 16173050
Alignment:
Q  60 ctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcaccc 159  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||  || |||||| ||| ||||| ||||||| |||| ||||||  | |||||||    
T  16173160 ctctctaacactcactctcctattgggtgaaacccatgtggatctcacctctatatgtgggattcatttccaatgtggggta-ccacatggatttcaccc 16173062  T
Q  160 aataaaagagtg 171  Q
    ||||| ||||||    
T  16173061 aataagagagtg 16173050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 43275773 - 43275916
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| || ||||| |||| |||||||||||| || ||||||| || ||||| |||||| |||||||| ||||||   |||||||| ||||||||    
T  43275773 agaaatgctaggagcactcactttctagcactctctccaacactcacttttttattgagtgaaattcatgtgggtctcacgattttatgtgggatccatt 43275872  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtg 171  Q
    |  ||  | ||||||||||||  | | |||||||||||||||||    
T  43275873 tcgaaaatctggtacccacatggattccacccaataaaagagtg 43275916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 11709655 - 11709724
Alignment:
Q  109 gctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |||||||||| ||||||||| ||||||||||||||||||| || ||||| |||||| ||||||| |||||    
T  11709655 gctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgtta 11709724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 932121 - 932030
Alignment:
Q  71 tcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaat 162  Q
    ||||||| ||||| ||| ||||| | |||| ||||||  ||||||||| ||||||||| |||||||||||| |||||| || ||||||||||    
T  932121 tcactctcctatttggtaaaacttacgtgggtctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcacccaat 932030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 11430442 - 11430502
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||| ||||||||||||| |||||||| ||||  |||||||||| ||||||||||||    
T  11430442 aatgctaacaacactctcttttgagcactctttctagcactcactcttttattgggtgaaa 11430502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 32848762 - 32848702
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||| ||||||||||||| | |||||||||||  |||||||||| ||||||||||||    
T  32848762 aatgctaacaacactctcttttgaacactctctctagcactcactcttttattgggtgaaa 32848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 43161299 - 43161147
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||| || ||||||||||||| || || |||||| || | |||||||| |||| | ||||||||| |||| | |||| | |||| ||| ||||||||    
T  43161299 agaaatgttaggaacactctctttctaacattctctcaaacattcactcttttatttgatgaaactcacgtgggtttcaccgttttacgtgtgatccatt 43161200  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgttaaa 180  Q
    |  || |||||  ||||| ||||| || | ||||||||||| ||| |||||||    
T  43161199 tctaaagtgtgagacccatataaattttatccaataaaagaatgagtgttaaa 43161147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 24886052 - 24886107
Alignment:
Q  45 tctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||| || |||||||||||| |||||||||| |||||||||||| ||||||||    
T  24886052 tctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgg 24886107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 27464807 - 27464709
Alignment:
Q  33 tgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaa 132  Q
    ||||||||| ||||| |||| | |||||||||||| |||||||| | |||||| |||||||||| | | || |||| |||||||||  ||||||||||||    
T  27464807 tgctaagaagactcttttttcaacactctctctaacactcactcatttattggttgaaactcatatag-tcccactactttatgtggaatccattttcaa 27464709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 41095791 - 41095728
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||  ||||||||||||| |||||||||||||  |||||||| | ||||||||||||    
T  41095791 agaaatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaa 41095728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 11135740 - 11135881
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttc 130  Q
    |||||||  ||||||||||||| |||||||||||||  ||||||| || ||||||||||||   ||||   || |||  ||||||||| | ||||||| |    
T  11135740 aatgctagcaacactctcttttgagcactctctctagcactcactattttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttcc 11135839  T
Q  131 aatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    || |||| |  || ||||  | ||||||||||||||||||||    
T  11135840 aaagtgtaggtcctacattgatttcacccaataaaagagtga 11135881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 26980441 - 26980381
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||| ||||||| ||||| | ||||||||||||||||||||||  |||||| |||||    
T  26980441 aatgctaacaacactcacttttcaacactctctctaatactcactctattattggatgaaa 26980381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 41917996 - 41918056
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  ||||||||||||| ||||| |||||||  |||||||||| ||||||||||||    
T  41917996 aatgctagcaacactctcttttgagcaccctctctagcactcactcttttattgggtgaaa 41918056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 11135912 - 11135861
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||||| || ||||||||||  |||||||||| ||||||||||||    
T  11135912 aacactctcttttgaggactctctctagcactcactcttttattgggtgaaa 11135861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 11430622 - 11430568
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgg 85  Q
    |||||||  ||||||||||||| |||||||||||||  |||||||||| ||||||    
T  11430622 aatgctagcaacactctcttttgagcactctctctagcactcactcttttattgg 11430568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 31602075 - 31602136
Alignment:
Q  46 ctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcac 107  Q
    ||||||| | |||||||||||| ||||| |||  |||||| |||||||||||||| ||||||    
T  31602075 ctcttttcaacactctctctaacactcattctcttattggatgaaactcatgtgggtctcac 31602136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 37306402 - 37306552
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  37306402 agaaatgctaggaacactctctttctagcactctctctaacactcactcttatattgggtgaaactcatgtgggtctcaccactttatgtgagatccatt 37306501  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||||||||||||||||| || |||||||||||| | ||||| |||||    
T  37306502 tccaatgtgtggtacccacatgaatttcacccaataagaaagtgagtgtta 37306552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 51475160 - 51475303
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| ||||||||||||||| |||||| ||  ||||||||||||| ||||||||||||||  ||||||||| ||||||||    
T  51475160 agaaatgctaggaacactctctttctagcactctctctaacactcaccctcttattgggtgaaacccatgtggatctcaccactttatgtgggatccatt 51475259  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtg 171  Q
    | |||||||||||||||||||  | |||||||||||| ||||||    
T  51475260 tccaatgtgtggtacccacatggatttcacccaataagagagtg 51475303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 43480427 - 43480277
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| |||||||||| |||  | ||||||| |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  43480427 agaaatgctaggaacactctctttctagcactctccctagcagtcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatt 43480328  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    ||||||||||||||||||||| || |||| ||||||| | ||||| |||||    
T  43480327 ttcaatgtgtggtacccacatgaatttcagccaataagaaagtgagtgtta 43480277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 31699475 - 31699624
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| | |||| ||||||| ||||||   |||||||| | ||||||    
T  31699475 agaaatgctaagaacactctctttctagcactctctctaacactcactctcctattggattaaacacatgtgggtctcaccattttatgtggggtccatt 31699574  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtt 177  Q
    | |||||| || ||||||||| || |||||||||||| ||||||| ||||    
T  31699575 tccaatgtatgatacccacatgaatttcacccaataagagagtgagtgtt 31699624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 6540408 - 6540258
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||| || ||||||||||||| || |||||||||||| ||||| ||| ||||||||||||||| |||||||||||||  |||| |||  ||||||||    
T  6540408 agaaatggtaggaacactctctttctatcactctctctaacactcattctcctattgggtgaaacttatgtggatctcaccactttgtgtaggatccatt 6540309  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | |||||| || || ||||||  | |||||||||||| |||||| ||||||    
T  6540308 tccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 30111951 - 30111802
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||| || ||||| ||||||| || || |||||| || |||||||||  ||||||||||||||||||||||||||||  ||||||||| ||| || |    
T  30111951 agaaatgatatgaacattctctttctaacattctctcaaacactcactctcatattgggtgaaactcatgtggatctcaccactttatgtgggat-caat 30111853  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||||||||||||||||| |  |||| ||||||| | ||||| |||||    
T  30111852 tccaatgtgtggtacccacatgactttcatccaataagaaagtgagtgtta 30111802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 39401308 - 39401388
Alignment:
Q  27 aagaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcac 107  Q
    ||||||| |||  |||||||||||| ||||| | ||||||||| |||||||||||||| |||||||||| |||||||||||    
T  39401308 aagaaatactataaacactctctttatagcattttctctaatattcactcttctattgagtgaaactcacgtggatctcac 39401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 50251505 - 50251599
Alignment:
Q  84 gggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    ||||||||||||||||  ||||||   |||| ||| ||||||||||||| |||||||| |||||| || |||||||||||||| ||||| |||||    
T  50251505 gggtgaaactcatgtgagtctcaccattttacgtgggatccattttcaacgtgtggtatccacatgaatttcacccaataaaaaagtgagtgtta 50251599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 21776506 - 21776597
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgaga 121  Q
    ||||||| |||||||||||| |||||||   | |||||||||| ||||||| |||||||||||| |||||||  ||||||  ||||||||||||    
T  21776506 agaaatgttaagaacactctatttttagt--tatctctaatacccactcttttattgggtgaaattcatgtgagtctcaccactttatgtgaga 21776597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 27362740 - 27362642
Alignment:
Q  30 aaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattt 128  Q
    |||||||||||||| | ||||| || ||||| || ||||||||| |  | |||||  |||||||||||||||||||||  ||||| |||||||||||||    
T  27362740 aaatgctaagaacattatctttctatcactccctataatactcatttatttattgaatgaaactcatgtggatctcaccactttacgtgagatccattt 27362642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 21710558 - 21710654
Alignment:
Q  69 actcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaa 166  Q
    |||||||||| ||||| ||||||||||||||  ||| |   ||||||||||| || ||||||||| |||| |||||||||||| |||||| |||||||    
T  21710558 actcactcttttattgtgtgaaactcatgtgagtcttatcactttatgtgag-tctattttcaatttgtgatacccacataaatttcaccaaataaaa 21710654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 6011626 - 6011579
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcact 75  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  6011626 agaaatgctaagaacactccctttttagcagtctctctaacactcact 6011579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 51206216 - 51206165
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||||| |||||||||||||  |||||||||| ||||||||||||    
T  51206216 aacactctcttttgagcactctctctagcactcactcttttattgggtgaaa 51206165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 7283169 - 7283294
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtgg 139  Q
    |||||||||||||||| ||||||| ||||| ||| |||| ||||  || ||| |||||||| ||||| |  ||||| || |||| |||| |||||||| |    
T  7283169 aacactctctttttagtactctctttaatattcattcttttatttagtaaaattcatgtgggtctcaatattttatctgggatctatttccaatgtgtcg 7283268  T
Q  140 tacccacataaacttcacccaataaaa 166  Q
    || ||||||| |||||| | |||||||    
T  7283269 ta-ccacatagacttcatcaaataaaa 7283294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 37315561 - 37315611
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactctt 78  Q
    ||||||||||  ||||||||||||| |||||||||||||| ||||||||||    
T  37315561 agaaatgctagcaacactctcttttgagcactctctctaacactcactctt 37315611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 41095300 - 41095230
Alignment:
Q  30 aaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    |||||||| ||||||||||||| || ||||||||| || || |||||| |||||||| ||||| |||||||    
T  41095300 aaatgctaggaacactctctttctaccactctctcaaacacccactctcctattgggggaaacccatgtgg 41095230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 42862600 - 42862459
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttc 130  Q
    |||||||| ||||||||||||| |||||| ||||||  ||||||| || ||||||||||||   ||||   || |||  ||||||||| | |||||||||    
T  42862600 aatgctaataacactctcttttgagcactttctctagcactcacttttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttc 42862501  T
Q  131 aatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    || |||||  ||  | ||  | ||||||||||||||||||||    
T  42862500 aaagtgtgaaacataaattgatttcacccaataaaagagtga 42862459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 51823184 - 51823131
Alignment:
Q  87 tgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggt 140  Q
    |||||||||||||| ||||||  ||||||||| |||||||||| ||||||||||    
T  51823184 tgaaactcatgtgggtctcaccactttatgtgcgatccatttttaatgtgtggt 51823131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 23716421 - 23716369
Alignment:
Q  47 tctttttagcactctctctaatactcactcttctattgggtgaaactcatgtg 99  Q
    ||||||||||||||||||||||||||| | ||||||| | ||||| |||||||    
T  23716421 tctttttagcactctctctaatactcatttttctattagatgaaattcatgtg 23716369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 8108954 - 8109017
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||  ||||||| ||||| | |||||||||||  |||||||||| ||||||||||||    
T  8108954 agaaatgctagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaa 8109017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 31699649 - 31699590
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||| || ||||||||| || |||||||||  |||||||||||| ||||||||    
T  31699649 acactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgg 31699590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 39810581 - 39810534
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggt 87  Q
    |||||||||||| ||||||||||||||| || ||||||| ||||||||    
T  39810581 aacactctctttctagcactctctctaacacccactcttttattgggt 39810534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 16650535 - 16650589
Alignment:
Q  112 ttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaa 166  Q
    ||||||| ||||||||||| |||| |||| |||||||||| |||| |||||||||    
T  16650535 ttatgtgggatccattttcgatgtttggtgcccacataaatttcatccaataaaa 16650589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 39471338 - 39471292
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactct 77  Q
    |||||||| ||||||||||||| | || |||||||||||||||||||    
T  39471338 aatgctaacaacactctcttttaaacattctctctaatactcactct 39471292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 51902729 - 51902640
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgt 117  Q
    ||||||||||| |  ||||||||| |  |||| | ||||| ||||||| || |||| ||||||| |||||||||||||| | ||||||||    
T  51902729 agaaatgctaaaaggactctctttcttacactttttctaacactcacttttttattaggtgaaattcatgtggatctcaatactttatgt 51902640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 6581013 - 6580864
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||| ||||    
T  6581013 agaaatgttaagaacactctctttctagcactctctctaacactcacccttctattgggtgaaactcatgtgggtctcaccactttatgtgggat-catt 6580915  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||||||||||||||||| || |||||||||||| || ||||||||||    
T  6580914 tccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgtta 6580864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 28700738 - 28700588
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||| ||||| || ||| |||| ||| |||||||||||||||| ||||||||||||||  ||||||  ||||||||| ||| ||||    
T  28700738 agaaatgctatgaacactttctttctatcacactctttaacactcactcttctattgagtgaaactcatgtgagtctcaccactttatgtgggattcatt 28700639  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | |||| ||||||||||||||||| || ||||||||| ||||||| |||||    
T  28700638 tccaatatgtggtacccacataaatttaacccaataagagagtgagtgtta 28700588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 33440530 - 33440650
Alignment:
Q  58 ctctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcac 157  Q
    |||| ||||| ||||||||| ||||| |||||||||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||||||| |  |||||    
T  33440530 ctctttctaacactcactctcctattaggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcac 33440629  T
Q  158 ccaataaaagagtgaatgtta 178  Q
    ||||||| |||||||||||||    
T  33440630 ccaataagagagtgaatgtta 33440650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 30085374 - 30085516
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||| | ||| ||||| ||||||||||||||||  |  ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  30085374 agaaatgctaggaacactatttttctagcattctctctaatactcaccatcttattgggtgaaactcatgtggatctcaccactttatgtgggatccatt 30085473  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagt 170  Q
    | |||  ||||  || ||||| || ||||| |||||| |||||    
T  30085474 tccaacatgtgacactcacatgaatttcactcaataagagagt 30085516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 16896414 - 16896338
Alignment:
Q  42 cactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtg 118  Q
    |||||||||| ||||||||||||||| ||||| | ||||||| |||||||||||||||| ||||||  |||||||||    
T  16896414 cactctctttctagcactctctctaacactcatttttctatttggtgaaactcatgtgggtctcaccactttatgtg 16896338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 34435063 - 34434948
Alignment:
Q  63 tctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaat 162  Q
    ||||| || ||||||| ||||||||||||| |||||||||||||| ||||||| || ||| ||||| ||| |||||| || | ||||   |||| |||||    
T  34435063 tctaacacccactcttttattgggtgaaacccatgtggatctcaccgctttatatgggatgcatttccaaggtgtgggactcgcataggtttcatccaat 34434964  T
Q  163 aaaagagtgaatgtta 178  Q
    || |||||||||||||    
T  34434963 aagagagtgaatgtta 34434948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 45057933 - 45058055
Alignment:
Q  56 cactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttc 155  Q
    ||||||||| || ||||||||| ||||||||||||||| |||||| ||||    ||||||||| ||||||||| ||| |||||  || |||||||  |||    
T  45057933 cactctctccaaaactcactctcctattgggtgaaacttatgtgggtctcgtcactttatgtgggatccatttccaaagtgtgagactcacataagtttc 45058032  T
Q  156 acccaataaaagagtgaatgtta 178  Q
    | ||||||| ||||||| |||||    
T  45058033 aaccaataagagagtgagtgtta 45058055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 12212262 - 12212157
Alignment:
Q  73 actcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    |||||| ||| |||| ||| |||| ||||||||||  ||||||||| || |||||| ||| |||| | ||||||||  | ||||||||| ||||||||||    
T  12212262 actcttttatcgggtaaaattcatatggatctcaccactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaagagtga 12212163  T
Q  173 atgtta 178  Q
    ||||||    
T  12212162 atgtta 12212157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 12456690 - 12456585
Alignment:
Q  73 actcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    |||||| ||| |||| ||| |||| ||||||||||  ||||||||| || |||||| ||| |||| | ||||||||  | ||||||||| ||||||||||    
T  12456690 actcttttatcgggtaaaattcatatggatctcaccactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaagagtga 12456591  T
Q  173 atgtta 178  Q
    ||||||    
T  12456590 atgtta 12456585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 35689481 - 35689587
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttc 130  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||| || |||||| |||||   ||||   || |||  ||||||||||| |||||||||    
T  35689481 aatggtaagaacactctcttttgagcactctctctagcactcacttttttattggatgaaatcaatgtatgtcccaccactttatgtgagttccattttc 35689580  T
Q  131 aatgtgt 137  Q
    || ||||    
T  35689581 aaagtgt 35689587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 24683569 - 24683616
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcact 75  Q
    |||||||||||| |||||||||||| | |||||||| |||||||||||    
T  24683569 agaaatgctaaggacactctcttttcaacactctctttaatactcact 24683616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 33440674 - 33440615
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||| || |||||||||||| | |||||||  |||||||||||| ||||||||    
T  33440674 acactctctttataacactctctctaacattcactctcttattgggtgaaagtcatgtgg 33440615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 16983575 - 16983529
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactct 77  Q
    |||||||  ||||||||||||| | ||||||||||||||||||||||    
T  16983575 aatgctagcaacactctcttttgaacactctctctaatactcactct 16983529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 5980051 - 5980014
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactct 77  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  5980051 aacactctcttttgaacactctctctaatactcactct 5980014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 9907296 - 9907223
Alignment:
Q  24 ttaaagaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatg 97  Q
    ||||| |||||||| ||||||| || || ||| ||  ||||||| ||| | |||||||||||||||||||||||    
T  9907296 ttaaaaaaatgctaggaacactatcattatagaaccatctctaacacttattcttctattgggtgaaactcatg 9907223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 35689651 - 35689602
Alignment:
Q  42 cactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||| |||||||||||||  ||||||| || ||||||||||||    
T  35689651 cactctcttttgagcactctctctagcactcacttttttattgggtgaaa 35689602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 54186925 - 54187075
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||||||||||||||||| || |||||||||||| | ||||||| ||||||||||||||||||||| |||||||   |||||||| ||||||||    
T  54186925 agaaatgctaagaacactctctttctaacactctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatt 54187024  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |  |||||||||||||||||| ||||||||||||||| ||||||| |||||    
T  54187025 tctaatgtgtggtacccacatgaacttcacccaataagagagtgagtgtta 54187075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 13639587 - 13639437
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||| |||||||| |||||| |||||||||||||||  | |||| |||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  13639587 agaaatgccaagaacaccctctttctagcactctctctaacgcccactattctattgggtgaaactcatgtgggtctcaccactttatgtgagatccatt 13639488  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||||||| ||||||||| || |||| ||||||||||||||| |||||    
T  13639487 tccaatgtgtgatacccacatgaatttcatccaataaaagagtgactgtta 13639437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 38602952 - 38602849
Alignment:
Q  69 actcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaaga 168  Q
    ||||||||| |||||||||||||||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||    
T  38602952 actcactctcctattgggtgaaactcatgtgagtctcactactttatgtgggatccattttcaatgtgtggtacccacataaattttaccgaataaaaga 38602853  T
Q  169 gtga 172  Q
    ||||    
T  38602852 gtga 38602849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 48543139 - 48543288
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||| | |||| ||||||| ||||||   |||||||| | ||||||    
T  48543139 agaaatgctaagaacactctctttctagcactcactctaacactcactctcctattggattaaacacatgtgggtctcaccattttatgtggggtccatt 48543238  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtt 177  Q
    | |||||| || ||||||||| || |||||||||||| ||||||| ||||    
T  48543239 tccaatgtatgctacccacatgaatttcacccaataagagagtgagtgtt 48543288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 50320598 - 50320448
Alignment:
Q  27 aagaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccat 126  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||  |||||||||| ||  ||||||   |||||||| ||| |||    
T  50320598 aagaaatgctaggaacactttctttctagcactctctctaacactcactcttctattgaatgaaactcatatgagtctcaccattttatgtgggat-cat 50320500  T
Q  127 tttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    ||  |||||||| |||||| || ||||||||||||||| ||| | |||||||    
T  50320499 ttctaatgtgtgatacccatatgaacttcacccaataagagaataaatgtta 50320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 20909291 - 20909431
Alignment:
Q  30 aaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatttt 129  Q
    ||||| || |||| |||||||| || ||| |||||||| ||| ||||| || ||||||||||||||||||| ||||||  ||||||||| ||||||||||    
T  20909291 aaatgttaggaacgctctctttctaacacactctctaacacttactctccttttgggtgaaactcatgtgggtctcaccactttatgtgggatccatttt 20909390  T
Q  130 caatgtgtggtacccacataaacttcacccaataaaagagt 170  Q
    ||||  ||||| ||||| | || |||||||||||| |||||    
T  20909391 caataggtggtgcccacctgaatttcacccaataagagagt 20909431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 29235832 - 29235682
Alignment:
Q  30 aaatgctaagaacactctctttttagcactctctctaatac--tcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||| || ||||||||||||| |||||| |||||||| ||  ||||| | |||||||||||||||||| ||  ||||||  ||||||||  ||||||||    
T  29235832 aaatgttaggaacactctctttctagcaccctctctaacacattcactttcctattgggtgaaactcatatgagtctcaccactttatgttggatccatt 29235733  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |  ||||||||||| || ||| || |||||||||||| ||||||| |||||    
T  29235732 tctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgtta 29235682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 37600309 - 37600249
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||| ||||||||||||| |||||||||||||  || ||||||| ||||||||||||    
T  37600309 aatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaa 37600249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 24748917 - 24748968
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| |||||    
T  24748917 aacactctcttttgagcactctctctaacactcactcttttattggatgaaa 24748968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 48543321 - 48543254
Alignment:
Q  33 tgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||| ||||||||||||| || ||||||||| || |||||||||  |||||||||||| ||||||||    
T  48543321 tgctatgaacactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgg 48543254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 13639411 - 13639472
Alignment:
Q  39 gaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||||| || |||||||||||| | |||||||| |||||| ||||| ||||||||    
T  13639411 gaacactctctttctaacactctctctaacagtcactcttttattggatgaaattcatgtgg 13639472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 29235658 - 29235719
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggat 102  Q
    ||||||||||| || |||||||||||| |||||||||  |||||||||||| ||||| ||||    
T  29235658 acactctctttctaacactctctctaacactcactctcttattgggtgaaattcatgaggat 29235719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 38928007 - 38928067
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  ||||||||||||| | |||| ||||||| |||||||||| ||||||||||||    
T  38928007 aatgctagcaacactctcttttgatcactttctctaacactcactcttttattgggtgaaa 38928067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 54187112 - 54187040
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    |||| ||||| | ||||||||||| || |||||||||||| |||||||||  |||||||||||  ||||||||    
T  54187112 agaagtgctatggacactctctttctaacactctctctaacactcactctcttattgggtgaagttcatgtgg 54187040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 28215767 - 28215866
Alignment:
Q  72 cactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtg 171  Q
    ||||||| ||||||||||||||||||||| |||||   ||||||| | | ||||||| ||| |||||  |||||| | |  |||||||||||| ||||||    
T  28215767 cactcttttattgggtgaaactcatgtgggtctcatcactttatgcggggtccatttccaaagtgtgagacccacgtgagtttcacccaataagagagtg 28215866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 54141075 - 54141012
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||| ||| |||||| |||||| |||||||||||||  |||||||| | ||||||||||||    
T  54141075 agaaatgttaacaacactttcttttgagcactctctctagcactcactcatttattgggtgaaa 54141012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 24734886 - 24734840
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactct 77  Q
    |||||||  ||||||||||||| | ||||||||||||||||||||||    
T  24734886 aatgctagcaacactctcttttgaacactctctctaatactcactct 24734840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 26223190 - 26223256
Alignment:
Q  82 ttgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacat 148  Q
    |||| ||||| ||||||||||||||   ||||||||| |||||||||||||| | || |||||||||    
T  26223190 ttggatgaaattcatgtggatctcatcactttatgtgggatccattttcaatatatgttacccacat 26223256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 38602820 - 38602878
Alignment:
Q  42 cactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    |||||||||| || ||||||||||||||||||||||| |||| ||| ||| | ||||||    
T  38602820 cactctctttctaacactctctctaatactcactcttttattcggtaaaatttatgtgg 38602878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 41451894 - 41451940
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactct 77  Q
    |||||||  ||||||||||||| | ||||||||||||||||||||||    
T  41451894 aatgctagcaacactctcttttgaacactctctctaatactcactct 41451940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 52951377 - 52951423
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactct 77  Q
    |||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  52951377 aatgctagcaacactctctttttaacactctctcaaatactcactct 52951423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 27243055 - 27243100
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgg 85  Q
    ||||||||||||| | |||||||||||| |||||||||| ||||||    
T  27243055 aacactctcttttgaacactctctctaacactcactcttttattgg 27243100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 54727998 - 54727945
Alignment:
Q  39 gaacactctctttttagcactctctctaatactcactcttctattgggtgaaac 92  Q
    ||||||||||||| |||||  |||||||||||||| ||||| ||||| ||||||    
T  54727998 gaacactctctttctagcatcctctctaatactcattcttcaattggttgaaac 54727945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 5139966 - 5140110
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| || | ||||  ||||||||| ||||||||    
T  5139966 agaaatgctaggaacactctctttctagcactctctctaacactcactctcctattgggtgaaactcatgcgggtttcaccactttatgtgggatccatt 5140065  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    ||||||||||||||||||||| || ||||| |||||| |||||||    
T  5140066 ttcaatgtgtggtacccacatgaatttcactcaataagagagtga 5140110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 7709918 - 7709781
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtgg 139  Q
    |||| ||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||  |||||  ||||||||| |||| |||| ||||||||||    
T  7709918 aacattctctttttagcaatctctctaacactcactctcctatagggtgaaactcatgtgggactcaccactttatgtgggatctatttccaatgtgtgg 7709819  T
Q  140 tacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  7709818 tacccacataaa-ttcacccaataaaagagtgagtgtta 7709781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 864096 - 864246
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||| ||| ||||||||||||| ||||||||||||||| ||| | | ||||||||| |||||| || ||||  ||||  |||||||||| ||||||||    
T  864096 agaaatactaggaacactctctttctagcactctctctaacacttatttttctattggatgaaacccaagtggggctcatcgctttatgtgggatccatt 864195  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |  |||||||||||||||||| || |||||||||||| ||||||| |||||    
T  864196 tctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgtta 864246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 6951882 - 6951762
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||||||| |||||| ||||| || |||||||| ||| ||||||  | ||||||| |||||||||||||| ||||||  ||||||||| ||||||||    
T  6951882 agaaatgctaaaaacactatctttctaacactctctttaacactcaccttcctattggatgaaactcatgtgggtctcaccactttatgtgggatccatt 6951783  T
Q  128 ttcaatgtgtggtacccacat 148  Q
    |||||||||||| ||||||||    
T  6951782 ttcaatgtgtggcacccacat 6951762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 14960644 - 14960781
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||| || ||| || |||||||||||| ||| ||||||||||  | || ||||||||||||||||| |   |||||||  |||||||||||||||||    
T  14960644 agaaatgttatgaataccctctttttagcattctttctaatactcgtttttttattgggtgaaactcatataagtctcactattttatgtgagatccatt 14960743  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaa 165  Q
    |||||||||| ||| ||||||||| |||| ||||||||    
T  14960744 ttcaatgtgtagtatccacataaatttcatccaataaa 14960781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 37285155 - 37285261
Alignment:
Q  72 cactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtg 171  Q
    |||||| ||||| |||||||||||| ||  |||||   ||||| ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  37285155 cactctcctattcggtgaaactcatttgagtctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagtg 37285254  T
Q  172 aatgtta 178  Q
    | |||||    
T  37285255 agtgtta 37285261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 8503913 - 8503809
Alignment:
Q  73 actcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    ||||| ||||||| |||||||||||||||||||||  ||||||||||||| |||||| |||||| |||| ||||||| | |||||||||| |||||||||    
T  8503913 actctcctattggatgaaactcatgtggatctcaccactttatgtgagattcatttttaatgtgcggtatccacatagatttcacccaat-aaagagtga 8503815  T
Q  173 atgtta 178  Q
     |||||    
T  8503814 gtgtta 8503809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 42635441 - 42635349
Alignment:
Q  79 ctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtg 171  Q
    ||||||| |||||||||||||| |||||   |||||||||  |||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  42635441 ctattggatgaaactcatgtgggtctcatcactttatgtggaatccattttcaatgtgtggtacccacatgaatttcacccaataaaaaagtg 42635349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 23403726 - 23403829
Alignment:
Q  69 actcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaaga 168  Q
    ||||||||| | |||||||||||||||||||| |||| | ||||||| || || |||||| ||| |||||||||||||||  | |||||||| ||| |||    
T  23403726 actcactctccaattgggtgaaactcatgtgggtctcgccgctttatttgggacccatttccaaagtgtggtacccacatggatttcacccagtaagaga 23403825  T
Q  169 gtga 172  Q
    ||||    
T  23403826 gtga 23403829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 37228496 - 37228559
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||  ||||||||||||| |||||||||||||  |||||||||| ||||||||||||    
T  37228496 agaaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaa 37228559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 35714472 - 35714589
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| |||||||||  ||||| ||||||||| || | ||||||| |||||  ||||||| ||||| | ||||||  ||||||| |||| |||||    
T  35714472 agaaatgctaggaacactct--ttttaacactctctccaacattcactctcctatttagtgaaacccatgtaggtctcaccactttatgcgaga-ccatt 35714568  T
Q  128 ttcaatgtgtggtacccacat 148  Q
    | ||| |||||||||||||||    
T  35714569 tccaaagtgtggtacccacat 35714589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 37398993 - 37398933
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||| |||||||| |||| |||||||||||||||||||| |||| ||||| ||||||    
T  37398993 aatgctaacaacactctattttaagcactctctctaatactcaatcttttattgagtgaaa 37398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 42182890 - 42182950
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  ||||||||||||| |||||||||||||  |||||||||| ||||||||||||    
T  42182890 aatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaa 42182950  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 27968916 - 27968979
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||  ||||||||||||| || ||||||||||  |||||||||| ||||||||||||    
T  27968916 agaaatgctagcaacactctcttttgagtactctctctagcactcactcttttattgggtgaaa 27968979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 28091671 - 28091608
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||  ||||||||||||| || ||||||||||  |||||||||| ||||||||||||    
T  28091671 agaaatgctagcaacactctcttttgagtactctctctagcactcactcttttattgggtgaaa 28091608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 28101903 - 28101840
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||  ||||||||||||| || ||||||||||  |||||||||| ||||||||||||    
T  28101903 agaaatgctagcaacactctcttttgagtactctctctagcactcactcttttattgggtgaaa 28101840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 28898216 - 28898156
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  |||||||| |||| |||||||||||||  |||||||||| ||||||||||||    
T  28898216 aatgctagcaacactcttttttgagcactctctctagcactcactcttttattgggtgaaa 28898156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 1107048 - 1107099
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||||| |||||||||||||  || ||||||| ||||||||||||    
T  1107048 aacactctcttttgagcactctctctagcacccactcttttattgggtgaaa 1107099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 6315840 - 6315786
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgg 85  Q
    |||||||| ||||||||||||| |||||||| | ||||| |||||||| ||||||    
T  6315840 aatgctaacaacactctcttttgagcactctttttaatattcactcttttattgg 6315786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 9132265 - 9132371
Alignment:
Q  56 cactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttc 155  Q
    |||||| ||||| |||||||||  ||||||||||||| || |||| ||||||   ||||||||  | | |||| ||| | |||||||||||||| | |||    
T  9132265 cactctttctaacactcactctcttattgggtgaaacccaagtgggtctcaccattttatgtggaaccaatttccaaagagtggtacccacatagatttc 9132364  T
Q  156 acccaat 162  Q
    |||||||    
T  9132365 acccaat 9132371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 23494325 - 23494410
Alignment:
Q  92 ctcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |||||| || |||||||  |||||||||||| ||||||||| ||||| || |||||| || |||| | ||||||||||||| |||||    
T  23494325 ctcatgcgggtctcactaatttatgtgagattcattttcaaagtgtgatatccacatgaatttca-cgaataaaagagtgagtgtta 23494410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 37195307 - 37195269
Alignment:
Q  110 ctttatgtgagatccattttcaatgtgtggtacccacat 148  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  37195307 ctttatgtgagatccatttttaatgtttggtacccacat 37195269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 12989363 - 12989326
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactct 77  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  12989363 aacactctcttttgaacactctctctaatactcactct 12989326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 9e-39; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 30892292 - 30892142
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||  ||||||   |||||||| ||||||||    
T  30892292 agaaatgctaggaacactctctttctagcactctctctaacactcactctcctattgggtgaaactcatatgagtctcaccattttatgtgggatccatt 30892193  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |  |||||||||||||||||| ||||||||| ||||| ||||||| |||||    
T  30892192 tctaatgtgtggtacccacatgaacttcaccgaataagagagtgagtgtta 30892142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 42958623 - 42958473
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| |||||||| |||||| ||||||| ||||||||| ||||||||||| || ||||||  ||||||||| ||||||||    
T  42958623 agaaatgctaggaacactctctttctagcactcactctaacactcacttttctattggatgaaactcatgcgggtctcaccactttatgtgggatccatt 42958524  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||| ||||||||||||| || |||||| ||||||| ||||| |||||    
T  42958523 tccaatgcgtggtacccacatgaatttcaccaaataaaaaagtgactgtta 42958473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 5990515 - 5990664
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||  |||||| | |||  ||||||| ||||||   |||||||| ||||||||    
T  5990515 agaaatgctaagaacgctctctttttagcactctctctaacactcactctcatattggattaaatacatgtgggtctcaccattttatgtgggatccatt 5990614  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtt 177  Q
    | |||||| |||||||||||| || |||||||||||||||||||| ||||    
T  5990615 tccaatgtatggtacccacatgaatttcacccaataaaagagtgagtgtt 5990664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 17190605 - 17190738
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||| | ||||| ||||||||| |||||| ||||||  ||||||||| ||||||||    
T  17190605 agaaatgctatgaacactctctttctagcactctctctaacactcactttcctattaggtgaaacttatgtgggtctcaccactttatgtgggatccatt 17190704  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaa 161  Q
    |  |||||||||||||| ||| || |||||||||    
T  17190705 tctaatgtgtggtacccgcatgaatttcacccaa 17190738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 18237186 - 18237282
Alignment:
Q  82 ttgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |||||||||| |||||||| ||||||  ||||||||| |||| |||||||||||||| ||||||||| || |||||||||||||||||||| |||||    
T  18237186 ttgggtgaaattcatgtgggtctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagtgagtgtta 18237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 4959279 - 4959339
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  4959279 aatgctagcaacactctcttttgagcactctctctaatacccactcttttattgggtgaaa 4959339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 10393768 - 10393852
Alignment:
Q  80 tattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataa 164  Q
    ||||| |||||||||  ||||| |||||| ||||||||| |||  ||||||||||||| |||||||||| || ||||||||||||    
T  10393768 tattgagtgaaactcgagtggaactcactactttatgtgggatttattttcaatgtgtagtacccacatgaatttcacccaataa 10393852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 3900040 - 3899985
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgg 85  Q
    ||||||||||||||||||||  |||||||||||| ||||| |||||||||||||||||    
T  3900040 agaaatgctaagaacactct--ttttagcactctttctaacactcactcttctattgg 3899985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 28436399 - 28436549
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||||||  |||  ||||||| | ||||| ||||||| |||||||||   ||| |||||||||| ||| ||||||||  ||||||  |  |||||||    
T  28436399 agaaatgctagaaacgatctctttattgcactttctctaacactcactctctcattcggtgaaactcgtgtagatctcaccactttatacggaatccatt 28436498  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    |  || |||||||| |||||| || |||||||||| | |||||||||||||    
T  28436499 tcaaaagtgtggtaaccacatgaatttcacccaattagagagtgaatgtta 28436549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 26072096 - 26072245
Alignment:
Q  23 tttaaagaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagat 122  Q
    |||| |||| |||||| ||||||||||||| |||||||| ||||||||||| |||| | ||||||||||   ||||   ||||||  |||||||||  ||    
T  26072096 tttagagaagtgctaacaacactctcttttgagcactctttctaatactcattctttttttgggtgaaatcaatgtatgtctcaccactttatgtggaat 26072195  T
Q  123 ccattttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
     ||||| ||| |||| |  |||||||    ||||||||||||||||||||    
T  26072196 tcatttccaaagtgtaggtcccacattgttttcacccaataaaagagtga 26072245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 41020240 - 41020317
Alignment:
Q  94 catgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagagtg 171  Q
    ||||||| ||||||  ||||||||| ||| ||||| |||| ||||||||||||||| | |||||||||||| ||||||    
T  41020240 catgtgggtctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtg 41020317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 40971632 - 40971572
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||| ||||||||||||| |||||||||||||  |||||||||| ||||| ||||||    
T  40971632 aatgctaacaacactctcttttgagcactctctctagcactcactcttttattgagtgaaa 40971572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 1205742 - 1205592
Alignment:
Q  30 aaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatttt 129  Q
    ||||| || ||||| | ||||||||||||||| ||||| | | |||||| |||||||||||| |||||||| | ||||   || || ||  |||||||||    
T  1205742 aaatgttatgaacattttctttttagcactctttctaacatttactcttttattgggtgaaattcatgtggttatcaccagttcatttggaatccatttt 1205643  T
Q  130 caatgtgtggtacccacataaacttcacccaataaaagagtgaatgttaaag 181  Q
     ||||| || ||||||||  || |||| ||||||||| |||| |||||||||    
T  1205642 taatgtatgctacccacaagaatttca-ccaataaaaaagtggatgttaaag 1205592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 42224770 - 42224629
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttc 130  Q
    |||||||  ||||||||||||| |||||||||||||  |||||||||| |||| |||||||   ||||   || |||  ||||||||| | ||||||| |    
T  42224770 aatgctagcaacactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgtatgtcccaccactttatgtgggttccatttcc 42224671  T
Q  131 aatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    || |||| |  || ||||  | ||||||||||||||||||||    
T  42224670 aaagtgtaggtcctacattgatttcacccaataaaagagtga 42224629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 26072285 - 26072225
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||  ||||||||||||| |||| ||||||||  |||||||||| ||||||||||||    
T  26072285 aatgctagcaacactctcttttgagcattctctctagcactcactcttttattgggtgaaa 26072225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 4959451 - 4959400
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    ||||||||||||| |||||||||||||  |||||||||| ||||||| ||||    
T  4959451 aacactctcttttgagcactctctctagcactcactcttttattgggggaaa 4959400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 5990689 - 5990630
Alignment:
Q  41 acactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||||||||| || |||| |||| || |||||||||| |||||||||||| ||||||||    
T  5990689 acactctctttctaacactttctccaacactcactcttttattgggtgaaattcatgtgg 5990630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 34818371 - 34818324
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcact 75  Q
    |||||||||| ||||| |||||||| |||||||||||||| |||||||    
T  34818371 agaaatgctaggaacattctcttttgagcactctctctaacactcact 34818324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 40699505 - 40699575
Alignment:
Q  58 ctctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattt 128  Q
    |||| ||||| ||||||| |  ||||||||||||| ||||||| ||||||| |||||| || |||||||||    
T  40699505 ctctttctaacactcactttcttattgggtgaaacccatgtgggtctcactactttatttgggatccattt 40699575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 6198529 - 6198671
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||||||| |||| |||||||| | |||||||   || | |||||| | ||| || |||||  ||| || |||||||  |||||||||  | |||||    
T  6198529 agaaatgctaacaacaatctcttttcaacactctcc--aacaatcactcgtttatgggatgaaatccatatgaatctcacgactttatgtggaacccatt 6198626  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    ||||| |||||| ||||||||  | ||||||||||||| ||||||    
T  6198627 ttcaaagtgtgggacccacatcgatttcacccaataaatgagtga 6198671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 28490730 - 28490767
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactct 77  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  28490730 aacactctcttttgaacactctctctaatactcactct 28490767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 40926229 - 40926184
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactca 73  Q
    ||||||||||| |||||| |||||| |||||||||||||| |||||    
T  40926229 agaaatgctaacaacactttcttttgagcactctctctaacactca 40926184  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 41105578 - 41105615
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactct 77  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  41105578 aacactctcttttgagcactctctctaatactcgctct 41105615  T

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Target: chr6 (Bit Score: 75; Significance: 5e-34; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 32439661 - 32439511
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    |||||| ||| ||||||||||||| ||||||||||||||| ||| | | ||||||||| |||||| || ||||  ||||| |||||||||| ||||||||    
T  32439661 agaaatactaggaacactctctttctagcactctctctaacacttatttttctattggatgaaacccaagtggggctcaccgctttatgtgggatccatt 32439562  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtgaatgtta 178  Q
    | ||||||||||||||||||| || |||||||||||| ||||||| |||||    
T  32439561 tccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgtta 32439511  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 7447562 - 7447706
Alignment:
Q  28 agaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccatt 127  Q
    ||||||| || ||||||||||||| ||||| ||||| ||| | |||| || |||||||||||| ||||||||| ||||||  ||||||||| ||||||||    
T  7447562 agaaatgttaggaacactctctttctagcattctctataacaatcaccctcctattgggtgaagctcatgtgggtctcaccactttatgtgggatccatt 7447661  T
Q  128 ttcaatgtgtggtacccacataaacttcacccaataaaagagtga 172  Q
    |  |||||||||||||||||| || ||||||||| || |||||||    
T  7447662 tctaatgtgtggtacccacatgaatttcacccaacaagagagtga 7447706  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 19090394 - 19090334
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaa 91  Q
    |||||||| ||||||||||||| |||||||||||||  || ||||||| ||||||||||||    
T  19090394 aatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaa 19090334  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 32439479 - 32439546
Alignment:
Q  33 tgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtgg 100  Q
    ||||| |||||||||||||  | |||||||||||| |||||||||  |||||||||||| ||||||||    
T  32439479 tgctatgaacactctctttcaaacactctctctaacactcactctcttattgggtgaaattcatgtgg 32439546  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 3929072 - 3928951
Alignment:
Q  27 aagaaatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccat 126  Q
    ||||||||| |  |||||| | ||||||||| | ||||||| |||| ||||||||||   ||||||| |||||  ||||| |  ||||||||||||| ||    
T  3929072 aagaaatgcaagaaacactatttttttagcattttctctaacactcgctcttctatttaatgaaactaatgtgagtctcattcttttatgtgagatcaat 3928973  T
Q  127 tttcaatgtgtggtacccacat 148  Q
    ||||||| | |||||| |||||    
T  3928972 tttcaatatatggtactcacat 3928951  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 10061032 - 10060983
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtga 89  Q
    ||||||||||||| |||||||||||||| ||||||| || ||||||||||    
T  10061032 aacactctcttttgagcactctctctaacactcacttttttattgggtga 10060983  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 17221519 - 17221643
Alignment:
Q  40 aacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtgg 139  Q
    |||||||||||| ||| ||||| |||   ||||| |||  |||| ||||||| ||| ||||  |||||  ||||||||| |||| ||||||||||| |||    
T  17221519 aacactctctttctagtactctttctgccactcattctcttattaggtgaaattcaagtgggactcaccactttatgtgggatctattttcaatgtatgg 17221618  T
Q  140 tacccacataaacttcacccaataa 164  Q
    |||| |||| || |||| |||||||    
T  17221619 tacctacatgaatttcatccaataa 17221643  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 6861419 - 6861462
Alignment:
Q  30 aaatgctaagaacactctctttttagcactctctctaatactca 73  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||    
T  6861419 aaatgctaagaatactttctttctagcactctctctaatactca 6861462  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 19090213 - 19090272
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaa 90  Q
    |||||||  ||||||||||||| |||||||||||||  |||||||||| |||||| ||||    
T  19090213 aatgctagcaacactctcttttgagcactctctctagcactcactcttttattggttgaa 19090272  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 6531477 - 6531380
Alignment:
Q  31 aatgctaagaacactctctttttagcactctctctaatactcactcttctattgggtgaaactcatgtggatctcactgctttatgtgagatccattt 128  Q
    |||||||  ||||||||||||| || |||||||| |  |||||||||| ||||||||||||   ||||   || |||| ||||||||||| |||||||    
T  6531477 aatgctagcaacactctcttttgaggactctctccagcactcactcttttattgggtgaaatcaatgtatgtcccactactttatgtgagttccattt 6531380  T

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Target: scaffold0922 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 791 - 709
Alignment:
Q  87 tgaaactcatgtggatctcactgctttatgtgagatccattttcaatgtgtggtacccacataaacttcacccaataaaagag 169  Q
    |||||||||||||| ||||||  ||||||||| |||||||||||||||||||||| |||||| || ||||| |||||| ||||    
T  791 tgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

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