View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5073-Insertion-11 (Length: 246)
Name: NF5073-Insertion-11
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073-Insertion-11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 3304768 - 3305007
Alignment:
| Q |
7 |
aatttcacaatgtgcatagccgcataccggatatacaaatcatcccgcgaaagctctgagaatatttgaagtgtttgattacaagtatctcgacgtagca |
106 |
Q |
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| T |
3304768 |
aatttcacaatgtgcctagccgcataccggatatacaaatcatcccgcgaaagctctgagaatatttgaagtgtttgattacaagtatctcgacgtagca |
3304867 |
T |
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| Q |
107 |
tctacgcttgaatgaaagtcctaatcttttactgagttacaaaattattcagtgacaaagatggaatctataagatactgatacacttttgttccttgat |
206 |
Q |
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| T |
3304868 |
tctacgcttgaatgaaagtcctaatcttttaccgagttacaaaattattcagtgacaaagatggaatctataagatactgatacacttttgttccttgat |
3304967 |
T |
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| Q |
207 |
gttgcttttgatcttatctgtgtaactttggtatctagct |
246 |
Q |
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| T |
3304968 |
gttgcttttgatcttatctgtgtaactttggtatctagct |
3305007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 3293098 - 3293290
Alignment:
| Q |
7 |
aatttcacaatgtgcatagccgcataccggatatacaaatcatcccgcgaaagctctgagaatatttgaagtgtttgattacaagtatctcgacgtagca |
106 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
3293098 |
aatttcacaatgtgtatagctgcataccggatatacaaatcatcccgcgaaagctctgagaacatttgaagtgtttgattacaagtatctcgaagtagca |
3293197 |
T |
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| Q |
107 |
tctacgcttgaatgaaagtcctaatcttttactgagttacaaaattattc--agtgacaaagatggaatctataagatactgatacacttttg |
197 |
Q |
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| T |
3293198 |
tttacgctcgaatggaagtcctaatcttctactgatttaccatattattctaagtgacaaagatggaatctataagatactgatacacttttg |
3293290 |
T |
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