View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5073-Insertion-2 (Length: 545)
Name: NF5073-Insertion-2
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 9534541 - 9534447
Alignment:
| Q |
375 |
atccaatcgaaaataaacatgtattaagatccatgtattattatgcttaactaataagc----taatacttctactagttctagttctggttctt |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
9534541 |
atccaatcgaaaataaacatgtattaagatccatgtattattatgcttaactagtaagctaattaatacttgtactagttctagttctggttctt |
9534447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 8303884 - 8303964
Alignment:
| Q |
327 |
aaggaagctacaaattgaagtttagaccttgacacacgtttaatattcatccaatcgaaaataaacatgtattaagatcca |
407 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || || ||||||| ||| ||||||||||||| | ||||||||| |
|
|
| T |
8303884 |
aaggaagctacaaattaaagtttagaccttgacacacattcaagattcatcaaatagaaaataaacatgcactaagatcca |
8303964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 499 - 545
Target Start/End: Complemental strand, 9533646 - 9533600
Alignment:
| Q |
499 |
tctttcatagtttttcaacaggatatatgattggatttatgcgagtc |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9533646 |
tctttcatagtttttcaacaggatatatgattggatttatgcgagtc |
9533600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 440
Target Start/End: Original strand, 8301234 - 8301340
Alignment:
| Q |
334 |
ctacaaattgaagtttagaccttgacacacgtttaatattcatccaatcgaaaataaacatgtattaagatccatgtattattatgcttaactaataagc |
433 |
Q |
| |
|
||||||||| |||||||||| || ||||||||| | ||||||||||| ||||||||||||| | ||||||||| ||| | |||||||||||||| | |
|
|
| T |
8301234 |
ctacaaattaaagtttagactttcacacacgttcgagattcatccaatggaaaataaacatgcactaagatccaaagattttcatgcttaactaataggt |
8301333 |
T |
|
| Q |
434 |
taatact |
440 |
Q |
| |
|
||||||| |
|
|
| T |
8301334 |
taatact |
8301340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 461 - 505
Target Start/End: Complemental strand, 9534421 - 9534377
Alignment:
| Q |
461 |
ttcttctagttatgattgaatatttgttcaaccttttttctttca |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9534421 |
ttcttctagttatgattgaatatttgttcaaccttttctctttca |
9534377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 8303027 - 8302991
Alignment:
| Q |
327 |
aaggaagctacaaattgaagtttagaccttgacacac |
363 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
8303027 |
aaggaagctacaaattaaagtttagatcttgacacac |
8302991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University