View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5073-Insertion-3 (Length: 500)
Name: NF5073-Insertion-3
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Original strand, 41233319 - 41233786
Alignment:
| Q |
10 |
gaaaacattgcttgaaatgttatttgttgtgaatattgtgcaggaagattgccaagaatggagggcaatgaggagggcttatggagtagtatttgactat |
109 |
Q |
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| T |
41233319 |
gaaaacactgcttgaaatgttatttgttgtgaatattgtgcaggaagattgccaagaatggaggccaatgaggagagcttatggagtagtgtttgactat |
41233418 |
T |
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| Q |
110 |
gccaatcctccaagtggtgaaataaatttgaggttccaagtgagtggaaatgcaggtgtttattgggtgcagtccaagaatgctatccctagtgattgga |
209 |
Q |
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| T |
41233419 |
gccaatcctccaagtggtgaaataaatttgaggttccaagtgagtggaaatgaaggtgtttattgggtgcagtccaagaatgctatccctagtgattgga |
41233518 |
T |
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| Q |
210 |
aggctggagctgcatatgacactatggttcagcttaattagaaataataattaacaaaactacttttgagtctgagatgagatcccaagagcatataata |
309 |
Q |
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| T |
41233519 |
aggctggagctgcatatgacactatggttcagcttaattaga---aataattaacaaaactacttttgagtc-----tgagatcccaagagc--ataata |
41233608 |
T |
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| Q |
310 |
ttggagccagtatctaatttgtttctatttgtgtatgtgtatgtcactatgtgttgattgatatatagtgatgttcttttgtctttaaggtctaaataag |
409 |
Q |
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| T |
41233609 |
ttggagccagtatctaatttgtttctatttgtgtatgtgtatgtcactatgtgtttattg----atagtgatgttcttttgtctttaaggtctaaataag |
41233704 |
T |
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| Q |
410 |
gattcgtgtactttccatatatccgagactacatggaatttgaataaaataaaatgttttatcctttctccttcatttaatg |
491 |
Q |
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| T |
41233705 |
gattcgtgtactttccatatatccgagactacatggaatttgaataaaataaaatgttttaccctttctcctttatttaatg |
41233786 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 4263227 - 4263135
Alignment:
| Q |
116 |
cctccaagtggtgaaataaatttgaggttccaagtgagtggaaatgcaggtgtttattgggtgcagtccaagaatgctatccctagtgattgg |
208 |
Q |
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| T |
4263227 |
cctccaagaggtgagatcaagttgaggctccaagtgagtggtagtgctgggctgtattgggtggagtccaagaatgttatctctagtgattgg |
4263135 |
T |
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