View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5073-Insertion-4 (Length: 419)
Name: NF5073-Insertion-4
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073-Insertion-4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 172 - 419
Target Start/End: Complemental strand, 14994213 - 14993963
Alignment:
| Q |
172 |
tcgttgagtatcaaggtatgataattgaatttatggaagaattaaagtatttaaaaatgttactaactttaagctaaattaccctttaaaacaacaaaat |
271 |
Q |
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| T |
14994213 |
tcgttgagtatcaaggtatgataaatgaatctatggaaaaattaaagtatttaaaaatgttactaactataagctaaattaccctttaaaacaacaaaat |
14994114 |
T |
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| Q |
272 |
cttctacattacttttgaattgctcgttattctgtgccttctactattactcaaatttcgaatatttcaatatctaataatattggtgatgttccttatt |
371 |
Q |
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| T |
14994113 |
cttctacattacttttcaattgctcgttattctgtgccttctactattactcaaatttcgaatatttcaatatctaataatattggtgatgttccttatt |
14994014 |
T |
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| Q |
372 |
atgacatccatcatgatgttactattgttgt---tgttttttcaatctagg |
419 |
Q |
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| T |
14994013 |
atgacatccatcatgatgttactattgttgttgttgttttttcaatctagg |
14993963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 14994503 - 14994360
Alignment:
| Q |
26 |
aggaagcacaaacaacgcttgtgtttcctacatatcgaaaatattcaaacaagttatggaagagtatattgatgatgcaatgaaatcaattatttcggag |
125 |
Q |
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| T |
14994503 |
aggaagcacaaacaaggcttgtgtttcctacatatcgaaaatattcaagcaagttatggaagagtatattgatgatgcaatgaaatcaattatttcggag |
14994404 |
T |
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| Q |
126 |
tcggatatgcatgcttgattccaggttcatggatgtgttggtgt |
169 |
Q |
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| T |
14994403 |
tcggatatgcatgcttgattccaggttcatgaatgtgttggtgt |
14994360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 14994577 - 14994536
Alignment:
| Q |
7 |
acctaatccatgtcaacggaggaagcacaaacaacgcttgtg |
48 |
Q |
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| T |
14994577 |
acctaatccatgtcaacggaggaagcacaaacaaggcttgtg |
14994536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 3094066 - 3093972
Alignment:
| Q |
46 |
gtgtttcctacatatcgaaaatattcaaacaagttatggaagagtatattgatgatgcaatgaaatcaattatttcggagtcggatatgcatgct |
140 |
Q |
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| T |
3094066 |
gtgtttccaacatatcgaagatattaaagcaagttaaggaagaatatagagatgatgcaatgaaatcaattattattgagtcggatatgcgtgct |
3093972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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