View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5073-Insertion-9 (Length: 382)
Name: NF5073-Insertion-9
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073-Insertion-9 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 27170127 - 27170501
Alignment:
| Q |
8 |
atatctcaagatatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattccc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27170127 |
atatctcaagatatgagtaatctgaagaaaaatcatcatccacttcaaattcatgagtctttttgttggtgttgagatcgatacgtacttatgaattccc |
27170226 |
T |
|
| Q |
108 |
agcattttgtgtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27170227 |
agcattttgtgtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccc |
27170326 |
T |
|
| Q |
208 |
cgcaaagtaacaccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
27170327 |
cgcaaagtaacaccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacactagtgaattcctttcctacctcgatttctt |
27170426 |
T |
|
| Q |
308 |
catgtggattcttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcctctcattg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
27170427 |
catgtggattcttcgggggaattaccggtgtaccattgtgatggttgtgatgtttccaatatagtccactcattg |
27170501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 27171183 - 27170809
Alignment:
| Q |
8 |
atatctcaagatatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattccc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| || |||||||||||||||| ||| ||||||||| |
|
|
| T |
27171183 |
atatctcaagatatgagtaatctgaagaaaaatcatcatcaacttcaaattcaagagtatttttcttagtgttgagatcgatacacgcttctgaattccc |
27171084 |
T |
|
| Q |
108 |
agcattttgtgtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccc |
207 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
27171083 |
aacattttgtgtaatattgacattggttggtaccaaaggaacatttacattaacatcaccttgaatcactgaaggttgattagaggttaacatggaaccc |
27170984 |
T |
|
| Q |
208 |
cgcaaagtaacaccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttctt |
307 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
27170983 |
tgcaatgtaacaccatttcccagtcgaattgtgagcaagtatccaccagaaaatattccatcgataacaccagtgatttcctctcctaccctgatttctt |
27170884 |
T |
|
| Q |
308 |
catgtggattcttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcctctcattg |
382 |
Q |
| |
|
||||||||||| ||||||| |||||| || |||||||||||||| | |||||||||| || |||||| ||||||| |
|
|
| T |
27170883 |
catgtggattcctcggggggattaccagtatatcattgtgatggttttgatgtttcctatgtagtccactcattg |
27170809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 7e-81; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 7e-81
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 10304443 - 10304093
Alignment:
| Q |
18 |
atatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattcccagcattttgt |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| || || || |||||| ||||||||||||| ||||| | ||| | |||| |||| ||||||| |
|
|
| T |
10304443 |
atatgagtaatctggagaaaaatcatcatccacttccaactcatgaatcttttcattggtgttgagattgatacatgcttcttaatttccagtattttgt |
10304344 |
T |
|
| Q |
118 |
gtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaagtaa |
217 |
Q |
| |
|
|| |||||||||||| ||| || ||||| |||| |||||||| |||||| |||||| |||||||||| || ||| |||||| |||||||||| |
|
|
| T |
10304343 |
gttagattgacattgcttgctaacaaaggaacaatcacattaccatcactttgaattagtgaaggttgatcagaatcgaacatg------cgcaaagtaa |
10304250 |
T |
|
| Q |
218 |
caccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtggatt |
317 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| | ||| |||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||| |
|
|
| T |
10304249 |
caccatttccttttctaattgtgagaaagtatccaccaggaattattccatcgataacaccagtgaatttcattcctaacctgatttcttcacgtggatt |
10304150 |
T |
|
| Q |
318 |
cttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcc |
374 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
10304149 |
cctcgggggaattaccgatgtatcattgtgatggttgtgatgtttcaaatgtagtcc |
10304093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 4e-79
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 2594323 - 2593964
Alignment:
| Q |
18 |
atatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattcccagcattttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || || |||||| |||||||||||| ||||| | ||| | |||| | || ||||||| |
|
|
| T |
2594323 |
atatgagtaatctgaagaaaaatcatcatccactgcaaactcatgaatcttttcactggtgttgagattgatacatgcttcttaatttcgagtattttgt |
2594224 |
T |
|
| Q |
118 |
gtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaagtaa |
217 |
Q |
| |
|
|| ||| |||||||| ||| || ||||| |||| |||||||| ||||||||||||| |||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
2594223 |
gttagactgacattgtttgctaacaaaggaacaatcacattaccatcaccttgaattagtgaaggttgataagaggcgaacatg------cgcaaagtaa |
2594130 |
T |
|
| Q |
218 |
caccatttcccactcgaattgtgagcaagtatccactatgaaatatt-ccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtggat |
316 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| | || |||| |||||||||||||||||||||||| |||||| | ||||||||||| |||||| |
|
|
| T |
2594129 |
caccatttccttttctaattgtgagaaagtatccaccagaaattatttccatcgataacaccagtgaattccattcctagcgtgatttcttcacgtggat |
2594030 |
T |
|
| Q |
317 |
tcttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcctctcattg |
382 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| ||||||||||| ||| || ||| ||||||| |
|
|
| T |
2594029 |
tcctcgggggaattactggtgtatcattgtgatggttgtgatgtttcaaatgtaatccactcattg |
2593964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 2593484 - 2593824
Alignment:
| Q |
18 |
atatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattcccagcattttgt |
117 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| || || || |||||| ||||||||||||| ||||| ||||| |||||| |||| ||||||| |
|
|
| T |
2593484 |
atataagtaatctggagaaaaatcatcatccacttccaactcaggaatcttttcattggtgttgagattgatacatacttttgaatttccagtattttgt |
2593583 |
T |
|
| Q |
118 |
gtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaagtaa |
217 |
Q |
| |
|
|| ||| ||||||| | |||||||| ||||||||||||| |||||| |||||| || |||||| || ||||| |||||| |||||||||| |
|
|
| T |
2593584 |
gttagactgacattacattctaccaaaggaacattcacattaccatcactttgaattagaaaaggttgatcagaggcgaacatg------cgcaaagtaa |
2593677 |
T |
|
| Q |
218 |
caccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtggatt |
317 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| | ||| ||||| ||||||||||| ||||| |||| |||||| ||||||||||||| ||||||| |
|
|
| T |
2593678 |
caccatttccttttgtaattgtgagcaagtatccaccaggaattattcaatcgataacacaagtgatttccattcctagcctgatttcttcacgtggatt |
2593777 |
T |
|
| Q |
318 |
cttcgggggaattaccggtgtatcattgtgatggytgtgatgtttcc |
364 |
Q |
| |
|
| | |||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
2593778 |
cctgaggggaattaccggtgtatcattgtcatggttgtgatgtttcc |
2593824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 10303605 - 10303963
Alignment:
| Q |
18 |
atatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattcccagcattttgt |
117 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| || || || |||||| ||||||||||||| ||||| | ||| |||||| |||| ||||||| |
|
|
| T |
10303605 |
atatgagtaatatggagaaaaatcatcatccacttccaactcaggaatcttttcattggtgttgagattgatacatgcttctgaatttccagtattttgt |
10303704 |
T |
|
| Q |
118 |
gtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaagtaa |
217 |
Q |
| |
|
|| ||| |||||| | ||| |||||||| | ||||||||||| ||||||||||||| |||||||||| || ||||| |||||| ||||||||| |
|
|
| T |
10303705 |
gttagactgacatagcttgctaccaaaggaccattcacattaccatcaccttgaattagtgaaggttgatcagaggcgaacatg------tgcaaagtaa |
10303798 |
T |
|
| Q |
218 |
caccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtggatt |
317 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||| | ||| || || ||||||||||| ||||| |||| || || ||||||||||||| | ||||| |
|
|
| T |
10303799 |
caccatttccttttcttattgtgatcaagtatccaccaggaattactcaatcgataacacaagtgatttccatttgtagcctgatttcttcacgaggatt |
10303898 |
T |
|
| Q |
318 |
cttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcctctcattg |
382 |
Q |
| |
|
| ||||| ||||| |||||||||| || |||| |||||||||||| | |||||| ||||||| |
|
|
| T |
10303899 |
acttgggggtattactggtgtatcatggtcatggctgtgatgtttcccttgtagtccactcattg |
10303963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 120 - 382
Target Start/End: Original strand, 2602757 - 2603025
Alignment:
| Q |
120 |
aagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaa------ |
213 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||||||||| ||||||| ||||||| || || |||||| |||||||||||||||||| |
|
|
| T |
2602757 |
aagattgacatttgttggtaccaaagggacattcatattaacatcgccttgaaatagtgaagcttgatcagaggtcaacatggaaccccgcaaacgcaaa |
2602856 |
T |
|
| Q |
214 |
gtaacaccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtg |
313 |
Q |
| |
|
| |||||||||||| | ||||| ||||||||||||| | ||| ||||||||| |||| |||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
2602857 |
gaaacaccatttccttttgtaattgaaagcaagtatccaccaggaattattccatcaataatgccagtgaattccgttcctatactgacttcttcatgtg |
2602956 |
T |
|
| Q |
314 |
gattcttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcctctcattg |
382 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||| |||||||||||| | |||||| ||||||| |
|
|
| T |
2602957 |
gattcctcgggggaattaccgttgtatcattgtcatggttgtgatgtttcccttgtagtccactcattg |
2603025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 120 - 382
Target Start/End: Original strand, 2616279 - 2616542
Alignment:
| Q |
120 |
aagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaa------ |
213 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||| |||||||||||||| | | |||||||||| || |||||| ||||||||||| |||||| |
|
|
| T |
2616279 |
aagattgacatttgctggtaccaaatggacattcatattaacatcaccttcagttagtgaaggttgatcagaggtcaacatggaacctcgcaaacgcaaa |
2616378 |
T |
|
| Q |
214 |
gtaacaccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtg |
313 |
Q |
| |
|
|||||||||||| | | |||||| |||||||||||| | ||| ||||||||| ||||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
2616379 |
gtaacaccattttcttttttaattgttagcaagtatccaacaggaattattccatcaataacaccagtgaattcct-----acactgacttcttcatgtg |
2616473 |
T |
|
| Q |
314 |
gattcttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcctctcattg |
382 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||| || ||||||||| | |||||| ||||||| |
|
|
| T |
2616474 |
gattcgtcgggagaattaccggtgtatcattgtcatggctgagatgtttcccttgtagtccactcattg |
2616542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 2616183 - 2616262
Alignment:
| Q |
12 |
ctcaagatatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatac |
91 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||||| || || || ||||||| |||||||| |||| ||||| |
|
|
| T |
2616183 |
ctcaaaatatgagtaatcttgagaaaaatcatcacccacttccaactcaggaatctttttcttggtgttcagattgatac |
2616262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 4e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 22230049 - 22230407
Alignment:
| Q |
18 |
atatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattcccagcattttgt |
117 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| || | || |||||| |||||||||||| ||||| ||| |||||| |||| ||||||| |
|
|
| T |
22230049 |
atatgagtaatttggagaaaaatcatcatccacttccaactgaggaatcttttcactggtgttgagattgatacaagcttctgaatttccagtattttgt |
22230148 |
T |
|
| Q |
118 |
gtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaagtaa |
217 |
Q |
| |
|
|| || |||||||| ||| |||||||| ||||||||||||| ||||||||||||| |||||| ||| || |||| |||||| ||||||||| |
|
|
| T |
22230149 |
gttaggctgacattgcttgctaccaaaggaacattcacattaccatcaccttgaattagtgaatgttgattagagacgaacatgt------gcaaagtaa |
22230242 |
T |
|
| Q |
218 |
caccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtggatt |
317 |
Q |
| |
|
||||||||| || |||||||||||||||||||| | ||| ||||| ||||||||||| ||||| || | |||||| ||||||||||||| ||||||| |
|
|
| T |
22230243 |
taccatttccttttctaattgtgagcaagtatccaccaggaattattcaatcgataacacaagtgattttcattcctagcctgatttcttcaagtggatt |
22230342 |
T |
|
| Q |
318 |
cttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcctctcattg |
382 |
Q |
| |
|
| ||||||||||||| ||||||||||||| |||| |||||||||||| | |||||| ||||||| |
|
|
| T |
22230343 |
cctcgggggaattactggtgtatcattgtcatggttgtgatgtttcctttgtagtccgctcattg |
22230407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 22230887 - 22230537
Alignment:
| Q |
18 |
atatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgagatcgatacgtacttatgaattcccagcattttgt |
117 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| || || || |||||| || ||| |||||| |||| ||||| | || | |||| ||||||| |
|
|
| T |
22230887 |
atatgagtaatccggagaaaaatcatcatccacttccaactcatgaatcttttcatttgtgctgagattgatagatacttcttaacttccagtattttgt |
22230788 |
T |
|
| Q |
118 |
gtaagattgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaagtaa |
217 |
Q |
| |
|
|| ||| ||||||| ||| || |||| |||| |||||||| ||||||||||||| |||||||||| || ||||| |||||| |||| ||||| |
|
|
| T |
22230787 |
gttagactgacatttcttgctaaaaaaggaacaatcacattaccatcaccttgaattagtgaaggttgatcagaggcgaacatg------cgcatagtaa |
22230694 |
T |
|
| Q |
218 |
caccatttcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtggatt |
317 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| | ||| ||||||||||||||||| |||||||||| |||||| |||||||| |||| ||||||| |
|
|
| T |
22230693 |
caccatttccttttctaattgtgagcaagtatccaccaggaattattccatcgataacactagtgaattccattcctagcctgattttttcacgtggatt |
22230594 |
T |
|
| Q |
318 |
cttcgggggaattaccggtgtatcattgtgatggytgtgatgtttccaatatagtcc |
374 |
Q |
| |
|
| |||||||||| |||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
22230593 |
gcttgggggaattataggtgtatcattgtgatggttgtgatgtttcaaatgtagtcc |
22230537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 125 - 364
Target Start/End: Complemental strand, 22193183 - 22192950
Alignment:
| Q |
125 |
tgacattggttggtaccaaagaaacattcacattaacatcaccttgaatcagtgaaggtttataagaggttaacatggaaccccgcaaagtaacaccatt |
224 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||| ||||||||||||| |||||||||| || | ||| |||||| || |||||||||||||| |
|
|
| T |
22193183 |
tgacattgcttgctaccaaaggaacattcacattaccatcaccttgaattagtgaaggttgatcaaaggcgaacatg------cggaaagtaacaccatt |
22193090 |
T |
|
| Q |
225 |
tcccactcgaattgtgagcaagtatccactatgaaatattccatcgataacaccagtgaattcctttcctaccctgatttcttcatgtggattcttcggg |
324 |
Q |
| |
|
||| | |||||||||||||||||| | ||| |||||||||||||| ||||||||||||| |||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
22193089 |
tccttttttcattgtgagcaagtatccagcaggaattattccatcgataataccagtgaattccattcctatcttgatttcttcacgtggattcctcggg |
22192990 |
T |
|
| Q |
325 |
ggaattaccggtgtatcattgtgatggytgtgatgtttcc |
364 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
22192989 |
ggaattaccggtgtatcattgtcatggttgtgatgtttcc |
22192950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 22193251 - 22193185
Alignment:
| Q |
18 |
atatgagtaatctgaagaaaaatcatcatccacttcaaattcrkgagtctttttgttggtgttgaga |
84 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || || || ||| || |||||||||||| |
|
|
| T |
22193251 |
atatgagtaatctagagaaaaatcatcatccacttccaactcaggaatctcttcattggtgttgaga |
22193185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University