View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5073_high_3 (Length: 361)
Name: NF5073_high_3
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 41232983 - 41233218
Alignment:
| Q |
14 |
agacttcataatgagtccacgaggctacgcaaaattgggacgcaatgcagatgcatctgcagagctattcaaatatggtgtagtagatattgaatacaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41232983 |
agacttcataatgagtccacgaggctacgcgaaattaggacgcaatgcagatgcatctgcagagctattcaaatatggtgtagtagatattgaatacaaa |
41233082 |
T |
|
| Q |
114 |
agagtcccatgtatgtacagtggctataacatagtggctcaagtccatgaacgcagcaaaaatcctgattactttgctgttgtagttctctatgtagatg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41233083 |
agagtcccatgtatgtacagtggctataacatagtggctcaagtccatgaacgcagcaaaaatcctgattactttgctgttgtagttctctatgtagatg |
41233182 |
T |
|
| Q |
214 |
gaatgtatgatgtcaatgctgttgaaatgtggcagg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41233183 |
gaatgtatgatgtcaatgctgttgaaatgtggcagg |
41233218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 41237350 - 41237407
Alignment:
| Q |
15 |
gacttcataatgagtccacgaggctacgcaaaattgggacgcaatgcagatgcatctg |
72 |
Q |
| |
|
|||||||||||||||||||| | || | ||||||||||||| ||||||| |||||||| |
|
|
| T |
41237350 |
gacttcataatgagtccacgtgccttctcaaaattgggacgaaatgcagttgcatctg |
41237407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 41244802 - 41244913
Alignment:
| Q |
15 |
gacttcataatgagtccacgaggctacgcaaaattgggacgcaatgcagatgcatctgcagagctattcaaatatggtgtagtagatattgaatacaaaa |
114 |
Q |
| |
|
|||||||||||||||||||| | || | || |||||||||||| |||| |||||||| | |||| |||||||| ||| | ||| |||||||||||| |
|
|
| T |
41244802 |
gacttcataatgagtccacgcgccttctcaggattgggacgcaacgcagctgcatctgaaaagctgaagaaatatggagtattggatgttgaatacaaaa |
41244901 |
T |
|
| Q |
115 |
gagtcccatgta |
126 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
41244902 |
gggtctcatgta |
41244913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 41244999 - 41245036
Alignment:
| Q |
212 |
tggaatgtatgatgtcaatgctgttgaaatgtggcagg |
249 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
41244999 |
tggaacgtatgatgtcaatgctgttgagatgtggcagg |
41245036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 4263900 - 4263735
Alignment:
| Q |
14 |
agacttcataatgagtccacgaggctacgcaaaattgggacgcaatgcagatgcatctgcagagctattcaaatatggtgtagtagatattgaatacaaa |
113 |
Q |
| |
|
|||||| || ||||| ||||| ||||| |||||||||| |||| ||||||||||| || || || ||||||||||| || ||||| ||||| ||| |
|
|
| T |
4263900 |
agactttatcatgagcccacgtggctattcaaaattgggcaaaaatggtgatgcatctgcggaactttttaaatatggtgtggtggatatagaatataaa |
4263801 |
T |
|
| Q |
114 |
agagtcccatgtatgtacagtggctataacatagtggctcaagtccatgaacgcagcaaaaatcct |
179 |
Q |
| |
|
||| |||| || | |||| ||||||||| || || | | |||||||||||||||||||||||| |
|
|
| T |
4263800 |
agaatcccttgcaaatacaatggctataatatcttgtttaaggtccatgaacgcagcaaaaatcct |
4263735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University