View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5073_low_1 (Length: 600)
Name: NF5073_low_1
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 15 - 505
Target Start/End: Complemental strand, 46922461 - 46921971
Alignment:
| Q |
15 |
cacagacaattaccttaacgctgagagaatagaagacaaattcatcagctgtagtgacattaaggtgcaagattgtgagacacaatccatgcaaactaga |
114 |
Q |
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| T |
46922461 |
cacagacaattaccttaacgctgagagaatagaagacaaattcatcagctgtagtgacattaaggtgcaagattgtgagacacaatccatgcaaactaga |
46922362 |
T |
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| Q |
115 |
aaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtcacttcaatatcagcaatattgcgagat |
214 |
Q |
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| T |
46922361 |
aaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtaacttcaatatcagcaatattgcgagat |
46922262 |
T |
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| Q |
215 |
tgaacctcaccacccatttttgtctcagaactctcacacacaccgtcacttgttgagtattgtggaaaggtaaaaaattcagaaaagggcttgtttttat |
314 |
Q |
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| T |
46922261 |
tgaacctcaccacccatttttgtctcagaactctcacacacaccgtcacttgttgagtattgtggaaaggtaaaaaattcagaaaagggcttgtttttat |
46922162 |
T |
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| Q |
315 |
tttcaacaatagtatcaaatttaccctccttttgtttttgtacaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaat |
414 |
Q |
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| T |
46922161 |
tttcaacaatagtatcaaatttaccctccttttgtttttgtacaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaat |
46922062 |
T |
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| Q |
415 |
aattgatgcttgatcaccctgcaaaattcatcaatcaaaacacaaaagtaaaaatgtgatcctaaccgcaatttaaaactaaatatttttc |
505 |
Q |
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| T |
46922061 |
aattgatgcttgatcaccctgcaaaattcatcaatcaaaacacaaaagtaaaaatgtgatcctaacagcaatttaaaactaaatatttttc |
46921971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 513 - 584
Target Start/End: Complemental strand, 46921945 - 46921874
Alignment:
| Q |
513 |
ctatagaagtaccctttggacgtaggattcaggcatgagagatctaagaacagagagatactcattcatttg |
584 |
Q |
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| T |
46921945 |
ctatagaagtaccctttggacgtaggattcaggcatgagagatctaagaacagagagatactcattcatttg |
46921874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 36675815 - 36675915
Alignment:
| Q |
104 |
tgcaaactagaaaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtcacttcaatatcagcaa |
203 |
Q |
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| T |
36675815 |
tgcaaaccagatacaattttcaagagctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaa |
36675914 |
T |
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| Q |
204 |
t |
204 |
Q |
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| T |
36675915 |
t |
36675915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 437
Target Start/End: Original strand, 36676080 - 36676160
Alignment:
| Q |
357 |
caccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca |
437 |
Q |
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| T |
36676080 |
caccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaattatagaagcttgatcaccctgca |
36676160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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