View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5073_low_3 (Length: 407)
Name: NF5073_low_3
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 971964 - 971578
Alignment:
| Q |
7 |
aagaatatgccacgtgtataaattacctagtagatttcattatccatatctagttataaaagttggcaactttatttatactatgtaaataaa-gataaa |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
971964 |
aagaaaatgccacgtgtataaattacctagtagatttcattatccatatctagttataaaagttggcaactttatatatactatgtaaataaaagataaa |
971865 |
T |
|
| Q |
106 |
taatatttcaaaacttagtggaataaaaacaattatttgtgtatttacttatttaccttcttagtgttttgtacttgttttcttggttgggaaggagttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971864 |
taatatttcaaaacttagtggaataaaaacaattatttgtgtatttacttatttaccttcttagtgttttgtacttgttttcttggttgggaaggagttg |
971765 |
T |
|
| Q |
206 |
gaagattgggaaggtacactagatagggtgtggagctatagctatagtttatgtatgcattaaaatttaaaattgcactcccaccctttgtacaagagag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971764 |
gaagattgggaaggtacactagatagggtgtggagctatagctatagtttatgtatgcattaaaatttaaaattgcactcccaccctttgtacaagagag |
971665 |
T |
|
| Q |
306 |
ccaaaagttgcatggcattttgtttggatctatttttaccaaacttcttgaaatttctttgtcatgtgactagagtgctattttaat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971664 |
ccaaaagttgcatggcattttgtttggatctatttttaccaaacttcttgaaatttctttgtcatgtgactagagtgctattttaat |
971578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University