View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5073_low_7 (Length: 248)
Name: NF5073_low_7
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39440229 - 39440472
Alignment:
| Q |
1 |
tcgacagaaaagaatctcaatttcaatgagttatgcgacctttaaatgcttttaaagtttaatattagatattattctatatatacggttggtgtaagca |
100 |
Q |
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| T |
39440229 |
tcgacataaaagaatctcaatttcaatgagttatgcgacctttaaatgcttttaaagtttaatatta----ttattctatatatacggttggtgtaagca |
39440324 |
T |
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| Q |
101 |
attttatattatcaattaagattgatttatccaaacttagattcgattcatattataatgtgacgtctgtatttcattaataccacgtataaagtacacc |
200 |
Q |
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| T |
39440325 |
tttttatattatcaattaagattgatttatccaaacttagattcgattcatattataatgtgactactgtatttcattaataccacgtataaagtacacc |
39440424 |
T |
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| Q |
201 |
aatacagttttacctctcagaataggatcaagcatttaggtagttact |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39440425 |
aatacagttttacctctcagaataggatcaagcatttaggtagttact |
39440472 |
T |
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