View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5073_low_8 (Length: 236)
Name: NF5073_low_8
Description: NF5073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5073_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 39440669 - 39440887
Alignment:
| Q |
3 |
atttttataaattaacggtgtaaatattattttgaggaatactaaggattctgctattgggccacctgtcattttccaaaaactaaatacgggataaccg |
102 |
Q |
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| T |
39440669 |
atttttatacattaacagtgtaaatattattttgaggaatgctaaggattcagctattgggccacctgtcattttccaaaaactaaatacgggataaccg |
39440768 |
T |
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| Q |
103 |
gctcctctggttttagatacacaannnnnnnnngttcaaacttcnnnnnnnnnnttgctcatccccttcgttgtgcctgactcattaaaccccactccta |
202 |
Q |
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| T |
39440769 |
gctcctctggtttgagatacacaatttttttttgttcaaacttcaaaacaaaaattgctcatccccttcgttgtgcctgactcattaaaccccactccta |
39440868 |
T |
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| Q |
203 |
ataatcaatacaaaaatct |
221 |
Q |
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||||||||||||||||||| |
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| T |
39440869 |
ataatcaatacaaaaatct |
39440887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 42868425 - 42868251
Alignment:
| Q |
50 |
attctgctattgggccacctgtcattttccaaaaactaaatacgggataaccggctcctctggttttagatacacaa---nnnnnnnnngttcaaacttc |
146 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42868425 |
attcagctattgggccacctgtcattttccaaaaaccaaatacgggataaccggctcctctggttttagatacacaattttttttttttgttcaaactta |
42868326 |
T |
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| Q |
147 |
nnnnnnnnnnttgctcatccccttcgttgtgcctgactcattaaaccccactcctaataatcaatacaaaaatct |
221 |
Q |
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| T |
42868325 |
aaaaaaaaagttgctcatctccttcgttgtgcctgactcattaaaccccactcctaataatcaatacaaaaatct |
42868251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 31305583 - 31305529
Alignment:
| Q |
71 |
tcattttccaaaaactaaatacgggataaccggctcctctggttttagatacaca |
125 |
Q |
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| T |
31305583 |
tcattttccaaaaaccaaatacgggataaccggcttccctggttttagatacaca |
31305529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 31305254 - 31305194
Alignment:
| Q |
157 |
ttgctcatccccttcgttgtgcctgactcattaaaccccactcctaataatcaatacaaaaa |
218 |
Q |
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||||||||| | |||||||||||||||||| |||| || ||||||||||||||||||||||| |
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| T |
31305254 |
ttgctcatctctttcgttgtgcctgactcagtaaagcc-actcctaataatcaatacaaaaa |
31305194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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