View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5074-Insertion-2 (Length: 56)

Name: NF5074-Insertion-2

Description: NF5074

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5074-Insertion-2

[»] chr4 (3 HSPs)

Target: chr4 (Bit Score: 46; Significance: 4e-18; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 46; E-Value: 4e-18

Query Start/End: Original strand, 11 - 56

Target Start/End: Original strand, 11787829 - 11787874

Alignment:

Q	11	ccttccatcacattttgttctcctcagtcacaagttatcttattct	56	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11787829	ccttccatcacattttgttctcctcagtcacaagttatcttattct	11787874	T

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Target: chr4; HSP #2

Raw Score: 46; E-Value: 4e-18

Query Start/End: Original strand, 11 - 56

Target Start/End: Original strand, 11799996 - 11800041

Alignment:

Q	11	ccttccatcacattttgttctcctcagtcacaagttatcttattct	56	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11799996	ccttccatcacattttgttctcctcagtcacaagttatcttattct	11800041	T

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Target: chr4; HSP #3

Raw Score: 31; E-Value: 0.000000004

Query Start/End: Original strand, 18 - 56

Target Start/End: Original strand, 11707526 - 11707564

Alignment:

Q	18	tcacattttgttctcctcagtcacaagttatcttattct	56	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	11707526	tcacattttgttctcctcaatcacaagtaatcttattct	11707564	T

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