View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5074_low_1 (Length: 434)
Name: NF5074_low_1
Description: NF5074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5074_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 33314248 - 33314545
Alignment:
| Q |
18 |
gattttatgaatgttatttgtgattgggttgtactttgagttggaataaaattaaaatagagtagggtggatttccacatgttgaaagtcattttttgag |
117 |
Q |
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| T |
33314248 |
gattttatgaatgttatttgtgattgggttgtactttgagttggaataaaattaaaatagagtagagtggatttccacatgttgaaagtcattttttggg |
33314347 |
T |
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| Q |
118 |
gggtaaggaatcattgtgaatctagttactctattatgaattgaatcactactatgctattgcctttgaatcatttcacnnnnnnntaccaagtattttg |
217 |
Q |
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| T |
33314348 |
gggtaaggaatcattgtgaatctagttactctattatgaattgaatcactactatgttattgcctttgaatcatttcacaaaaaaataccaagtattttg |
33314447 |
T |
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| Q |
218 |
tacacaagtttttagcataaaatgtactttggattgttccgttgagacttatttagggagtctatctagtaatctatttttacaattaaacttatctt |
315 |
Q |
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| T |
33314448 |
tacacaagtttttagtataaaatgtactttggattgttccgttgagacttatttagggagtctaactagtaatccatttttacaattaaacctatctt |
33314545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 325 - 427
Target Start/End: Original strand, 33315966 - 33316068
Alignment:
| Q |
325 |
tttacattattctaaacttctctaaacactctctttcaaaccctagccattctctttgacataaactataatttcaatgttttttgttactacagttcat |
424 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |
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| T |
33315966 |
tttacattattctaaacttccccaaacactctctttcaaaccctagccattctctttgacataaactatcatttcagtgttctttgttactacagttcat |
33316065 |
T |
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| Q |
425 |
ttc |
427 |
Q |
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| T |
33316066 |
ttc |
33316068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 33314550 - 33314618
Alignment:
| Q |
348 |
aaacactctctttcaaaccctagccattctctttgacataaactataatttcaatgttttttgttacta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
33314550 |
aaacactctctttcaaaccctagccattctctttgacataaactataattttaatgttctttgttacta |
33314618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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