View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5074_low_4 (Length: 238)

Name: NF5074_low_4
Description: NF5074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5074_low_4
NF5074_low_4
[»] chr3 (2 HSPs)
chr3 (1-224)||(50501973-50502196)
chr3 (48-82)||(35480462-35480496)
[»] chr5 (1 HSPs)
chr5 (51-103)||(17868108-17868161)
[»] chr4 (2 HSPs)
chr4 (51-103)||(36741033-36741086)
chr4 (139-175)||(7148773-7148809)
[»] scaffold0027 (1 HSPs)
scaffold0027 (139-175)||(142340-142376)
[»] chr8 (2 HSPs)
chr8 (139-175)||(28879059-28879095)
chr8 (56-103)||(28879184-28879232)
[»] chr7 (3 HSPs)
chr7 (139-175)||(1054117-1054153)
chr7 (139-175)||(33288148-33288184)
chr7 (139-175)||(47511044-47511080)
[»] chr6 (1 HSPs)
chr6 (139-175)||(10054382-10054418)
[»] chr2 (1 HSPs)
chr2 (56-103)||(8832586-8832634)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 50502196 - 50501973
Alignment:
Q  1 ccatctatgagtttctaggtaatgacattccatttgtgattttaggctaggggctcgtttggattgccttattttttagctttgaaaactagcttatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50502196 ccatctatgagtttctaggtaatgacattccatttgtgattttaggctaggggctcgtttggattgccttattttttagctttgaaaactagcttatgta 50502097  T
Q  101 aatcatattttcttatgctaccttgacaagctcgtgaagaataatacataaaagctgattaatttgcataagctcnnnnnnnnnnnnnnnntcccacagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||    
T  50502096 aatcatattttcttatgctaccttgacaagctcgtgaagaataatacataaaagctgattaatttgcataagctcaaaataaaaataaaaatcccacagg 50501997  T
Q  201 cccaagttatgtgtgtgctttctg 224  Q
    ||||||||||||||||||||||||    
T  50501996 cccaagttatgtgtgtgctttctg 50501973  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 35480496 - 35480462
Alignment:
Q  48 taggggctcgtttggattgccttattttttagctt 82  Q
    ||||||||||||||||||| |||||||||||||||    
T  35480496 taggggctcgtttggattgacttattttttagctt 35480462  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 17868108 - 17868161
Alignment:
Q  51 gggctcgtttggattgccttattttttagctt-tgaaaactagcttatgtaaat 103  Q
    |||||||||||||||| ||||||||||||||| || ||| ||||||||| ||||    
T  17868108 gggctcgtttggattggcttattttttagcttatggaaaatagcttatgcaaat 17868161  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 36741086 - 36741033
Alignment:
Q  51 gggctcgtttggattgccttattttttagctt-tgaaaactagcttatgtaaat 103  Q
    ||||| |||||||||| ||||||||||||||| |||||| ||||||||| ||||    
T  36741086 gggcttgtttggattggcttattttttagcttatgaaaaatagcttatgcaaat 36741033  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 7148809 - 7148773
Alignment:
Q  139 gaataatacataaaagctgattaatttgcataagctc 175  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  7148809 gaataatacataaaagcttatttatttgcataagctc 7148773  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 142376 - 142340
Alignment:
Q  139 gaataatacataaaagctgattaatttgcataagctc 175  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  142376 gaataatacataaaagctcatttatttgcataagctc 142340  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 28879095 - 28879059
Alignment:
Q  139 gaataatacataaaagctgattaatttgcataagctc 175  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  28879095 gaataatacataaaagcttatttatttgcataagctc 28879059  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 28879232 - 28879184
Alignment:
Q  56 cgtttggattgccttattttttagctt-tgaaaactagcttatgtaaat 103  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||| ||||    
T  28879232 cgtttggattgacttattttttagcttatgaaaaatagcttatgcaaat 28879184  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 1054117 - 1054153
Alignment:
Q  139 gaataatacataaaagctgattaatttgcataagctc 175  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  1054117 gaataatacataaaagcttatttatttgcataagctc 1054153  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 33288148 - 33288184
Alignment:
Q  139 gaataatacataaaagctgattaatttgcataagctc 175  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  33288148 gaataatacataaaagcttatttatttgcataagctc 33288184  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 47511080 - 47511044
Alignment:
Q  139 gaataatacataaaagctgattaatttgcataagctc 175  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  47511080 gaataatacataaaagcttatttatttgcataagctc 47511044  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 10054418 - 10054382
Alignment:
Q  139 gaataatacataaaagctgattaatttgcataagctc 175  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  10054418 gaataatacataaaagcttatttatttgcataagctc 10054382  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 8832634 - 8832586
Alignment:
Q  56 cgtttggattgccttattttttagctt-tgaaaactagcttatgtaaat 103  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||| ||||    
T  8832634 cgtttggattgacttattttttagcttatgaaaaatagcttatgcaaat 8832586  T

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