View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5075-Insertion-1 (Length: 732)

Name: NF5075-Insertion-1
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5075-Insertion-1
NF5075-Insertion-1
[»] chr8 (3 HSPs)
chr8 (8-519)||(12125202-12125715)
chr8 (547-714)||(12125744-12125907)
chr8 (674-732)||(6393848-6393906)
[»] chr6 (3 HSPs)
chr6 (36-510)||(12643883-12644357)
chr6 (693-732)||(10219603-10219642)
chr6 (675-730)||(20565755-20565810)
[»] chr4 (8 HSPs)
chr4 (179-448)||(3255615-3255884)
chr4 (179-415)||(5042545-5042780)
chr4 (627-707)||(16970888-16970968)
chr4 (693-732)||(8170765-8170804)
chr4 (675-730)||(32934123-32934178)
chr4 (693-730)||(5979401-5979438)
chr4 (693-730)||(35255464-35255501)
chr4 (693-730)||(46804823-46804860)
[»] chr5 (4 HSPs)
chr5 (183-420)||(18055792-18056029)
chr5 (303-448)||(5214083-5214228)
chr5 (675-719)||(37853279-37853323)
chr5 (693-732)||(2707777-2707816)
[»] chr1 (3 HSPs)
chr1 (438-519)||(43838561-43838642)
chr1 (424-516)||(51989790-51989882)
chr1 (693-732)||(8779018-8779057)
[»] chr7 (7 HSPs)
chr7 (303-433)||(25117213-25117343)
chr7 (693-732)||(14669299-14669338)
chr7 (675-730)||(23474756-23474811)
chr7 (693-731)||(12849719-12849757)
chr7 (693-730)||(32996503-32996540)
chr7 (693-730)||(40355071-40355108)
chr7 (693-730)||(46720018-46720055)
[»] chr3 (3 HSPs)
chr3 (693-730)||(34294106-34294143)
chr3 (691-730)||(47944351-47944390)
chr3 (693-731)||(30843805-30843843)
[»] chr2 (3 HSPs)
chr2 (693-730)||(6788487-6788524)
chr2 (693-730)||(19206503-19206540)
chr2 (693-730)||(20966217-20966254)


Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Original strand, 12125202 - 12125715
Alignment:
Q  8 tcttcttcgttgagttttctgcaacacaagtgttatcctaaatgttgatggaagttatcttgcctctaatacaagagctggctatggagacccttttcga 107  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  12125202 tctttttcgttgagttttctgcaacacaaatgttatcttaaatgttgatggaagttatcttatctctaatacaagagctggctatggagacccttttcga 12125301  T
Q  108 aattatgcgggctattatctgatagatttttaaggtttcatccaagattcaacaaacatcctttatgcggtactttttgcaatttatcaaggtctcatgt 207  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12125302 aattatgcgggctattatctgataggtttttcaggtttcatccaagattcaacaaacatcctttatgcggtactttttgcaatttatcaaggtctcatgt 12125401  T
Q  208 tagcccagaaaaaggatattgctgattttgtttgttattgagactctttgcattgcatcaatctcattaagggaccatctatgaggttccaca--tatat 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  12125402 tagccaagaaaaaggatattgctgattttgtttgttattgagactctttgcattgcatcaatctcattaagggaccatctatgaggttccacatctatat 12125501  T
Q  306 gcagtgttgattcaagacataaaagagttgcttgatcatatgaatgttactatttatcatactctgagataagggaatcaatgtgctaattttatggcca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12125502 gcagtgttgattcaagacataaaagagttgcttgatcatatgaatgttagtatttatcatactctgagataagggaatcaatgtgctaattttatggcca 12125601  T
Q  406 agattggagcatccttgcatattgatttatgccatcatacatctcctccagaaagccttcggagtctcttgaggattgatgcggccggaactatcttttc 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||     
T  12125602 agattggagcatccttgcatattgatttatgccatcatacatctcctccagaaaaccttcggagtctcttgaggattgatgcggctgaaactatcttttt 12125701  T
Q  506 tagagaatagtttg 519  Q
    ||||||||||||||    
T  12125702 tagagaatagtttg 12125715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 547 - 714
Target Start/End: Original strand, 12125744 - 12125907
Alignment:
Q  547 gtccttgttagcatttgtaaccaaaagaaatatcagtcattatacaaaaggaattaatcaccataagtatttacttatcggtcatattagtcattatatg 646  Q
    |||||||||||||||||||||||||| |||||| |||    |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |    
T  12125744 gtccttgttagcatttgtaaccaaaataaatataagt----atacaaaaagaattaatcaccataagtatttacttatcggtcatatcaatcattatacg 12125839  T
Q  647 aaaagaattaatctcagcattgcaggcctattttaatgttattaattattttgactaacaaagtgcac 714  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  12125840 aaaagaattaatcttagcattgcaagcctattttaatgttattgattattttgactaacaaagtgcac 12125907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 732
Target Start/End: Complemental strand, 6393906 - 6393848
Alignment:
Q  674 ctattttaatgttattaattattttgactaacaaagtgcacaatcagatactattttga 732  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||   ||||||||||    
T  6393906 ctattttaatgttaggaactattttgactaataaagtgcacaatcatgaactattttga 6393848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 36 - 510
Target Start/End: Complemental strand, 12644357 - 12643883
Alignment:
Q  36 agtgttatcctaaatgttgatggaagttatcttgcctctaatacaagagctggctatggagacccttttcgaaattatgcgggctattatctgatagatt 135  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| | || ||||||||||||||| ||| | ||||||| ||  |    
T  12644357 agtgttatcctaaatgttgatggaagttgtcttgcctccaatactagagctggctatggtggcctttttcgaaattatgcaggcaactatctgacaggat 12644258  T
Q  136 tttaaggtttcatccaagattcaacaaacatcctttatgcggtactttttgcaatttatcaaggtctcatgttagcccagaaaaaggatattgctgattt 235  Q
    ||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||  || |||||| ||||||||||||    
T  12644257 tttcaggtttcatccaagattcaacagacatcctttatgcggaactttttgctatttatcagggtctcatgttagctaaggaaaaggctattgctgattt 12644158  T
Q  236 tgtttgttattgagactctttgcattgcatcaatctcattaagggaccatctatgaggttccacatatatgcagtgttgattcaagacataaaagagttg 335  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||  |||||||||||||||||||||||||||||||||    
T  12644157 tgtttgttattcagactctttgcattgcatcaatctcattaaggggccatcaatgagattccacacctatgcagtgttgattcaagacataaaagagttg 12644058  T
Q  336 cttgatcatatgaatgttactatttatcatactctgagataagggaatcaatgtgctaattttatggccaagattggagcatccttgcatattgatttat 435  Q
    ||||||||||||||| ||||||||| ||||||| || || |||||||||||||| || | |||||||||||  |||||||||||||| ||||||| ||||    
T  12644057 cttgatcatatgaatattactatttgtcatactttgcgagaagggaatcaatgtactgactttatggccaaacttggagcatccttggatattgaattat 12643958  T
Q  436 gccatcatacatctcctccagaaagccttcggagtctcttgaggattgatgcggccggaactatcttttctagag 510  Q
    | |||||| ||||||||| |||| ||||||  ||||| ||||||||||| |||| ||||||||| ||||||||||    
T  12643957 gtcatcattcatctcctcgagaaggccttcaaagtcttttgaggattgacgcggtcggaactattttttctagag 12643883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 732
Target Start/End: Complemental strand, 10219642 - 10219603
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactattttga 732  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  10219642 tattttgactaacaaagtgcacaatcaggaactattttga 10219603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 730
Target Start/End: Original strand, 20565755 - 20565810
Alignment:
Q  675 tattttaatgttattaattattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||||  ||||||||||||| | ||||| ||||||||| ||||||||    
T  20565755 tattttaatgttatggattattttgactagcgaagtggacaatcagagactatttt 20565810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 179 - 448
Target Start/End: Original strand, 3255615 - 3255884
Alignment:
Q  179 actttttgcaatttatcaaggtctcatgttagcccagaaaaaggatattgctgattttgtttgttattgagactctttgcattgcatcaatctcattaag 278  Q
    ||||||||| |||||||| || ||| |||||||| || ||||| || ||||| || ||||||| |||| ||||||  ||||||| || ||| | |||||     
T  3255615 actttttgctatttatcatggcctcttgttagccaaggaaaagaattttgctcatcttgtttgctattcagactcaatgcattgtattaatttaattaaa 3255714  T
Q  279 ggaccatctatgaggttccacatatatgcagtgttgattcaagacataaaagagttgcttgatcatatgaatgttactatttatcatactctgagataag 378  Q
    || ||| | |||| ||| ||||  |||||||||||||| ||||||||||| |||||| |||||| | ||||||| |||| || ||||||| ||||| ||     
T  3255715 gggccaacaatgaagtttcacagttatgcagtgttgatccaagacataaaggagttgtttgatcttttgaatgtcactaattgtcatactttgagagaat 3255814  T
Q  379 ggaatcaatgtgctaattttatggccaagattggagcatccttgcatattgatttatgccatcatacatc 448  Q
    |||| ||||||||  ||||||||| |||  || |||||| |||  ||||||| |||||||||||| ||||    
T  3255815 ggaaccaatgtgcagattttatggtcaaacttagagcattcttatatattgacttatgccatcatgcatc 3255884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 179 - 415
Target Start/End: Complemental strand, 5042780 - 5042545
Alignment:
Q  179 actttttgcaatttatcaaggtctcatgttagcccagaaaaaggatattgctgattttgtttgttattgagactctttgcattgcatcaatctcattaag 278  Q
    ||||||||  |||||||| || ||| ||| |||| || ||||| || |||||||| ||||||| |||| ||||||  ||||||| ||  || | |||||     
T  5042780 actttttgttatttatcagggactcttgt-agccaaggaaaagaatgttgctgatcttgtttgctattcagactcaatgcattgtattcatttaattaaa 5042682  T
Q  279 ggaccatctatgaggttccacatatatgcagtgttgattcaagacataaaagagttgcttgatcatatgaatgttactatttatcatactctgagataag 378  Q
    || |||   |||| ||| ||||  ||||| |||||||| |||||||||||||||||| |||||  | |||||||  |||||| ||||||||||||| ||     
T  5042681 gggccaataatgaagtttcacagttatgccgtgttgatccaagacataaaagagttgtttgatattttgaatgtcgctatttgtcatactctgagagaaa 5042582  T
Q  379 ggaatcaatgtgctaattttatggccaagattggagc 415  Q
    |||| |||||||   |||||||||||||| |||||||    
T  5042581 ggaaccaatgtgtggattttatggccaagcttggagc 5042545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 707
Target Start/End: Original strand, 16970888 - 16970968
Alignment:
Q  627 gtcatattagtcattatatgaaaagaattaatctcagcattgcaggcctattttaatgttattaattattttgactaacaa 707  Q
    |||||||||||| ||||||||||||| ||||| ||||||| | | | |||||||||||| ||  |  ||||||||||||||    
T  16970888 gtcatattagtccttatatgaaaagagttaatgtcagcatcgaaagactattttaatgtcatacaccattttgactaacaa 16970968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 732
Target Start/End: Complemental strand, 8170804 - 8170765
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactattttga 732  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  8170804 tattttgactaacaaagtgcacaatcaaagactattttga 8170765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 730
Target Start/End: Original strand, 32934123 - 32934178
Alignment:
Q  675 tattttaatgttattaattattttgactaacaaagtgcacaatcagatactatttt 730  Q
    |||||||||||||  || ||||||||||| ||||||||||||||| | ||||||||    
T  32934123 tattttaatgttagaaactattttgactagcaaagtgcacaatcaaaaactatttt 32934178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Complemental strand, 5979438 - 5979401
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  5979438 tattttgactaacgaagtgcacaatcatatactatttt 5979401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 35255464 - 35255501
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  35255464 tattttgactaataaagtgcaaaatcagatactatttt 35255501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Complemental strand, 46804860 - 46804823
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  46804860 tattttgactaacaaagtgtacaatcagagactatttt 46804823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 420
Target Start/End: Original strand, 18055792 - 18056029
Alignment:
Q  183 tttgcaatttatcaaggtctcatgttagcccagaaaaaggatattgctgattttgtttgttattgagactctttgcattgcatcaatctcattaagggac 282  Q
    ||||| |||||||| || ||| |||||||| || ||||| || ||| |||| ||||||| |||| ||||||  ||||||| || ||| | ||||| || |    
T  18055792 tttgctatttatcacggcctcttgttagccaaggaaaagaatgttgttgatcttgtttgctattcagactcaatgcattgtattaatttaattaaagggc 18055891  T
Q  283 catctatgaggttccacatatatgcagtgttgattcaagacataaaagagttgcttgatcatatgaatgttactatttatcatactctgagataagggaa 382  Q
    || |||||| ||| ||||  ||||  ||| | || ||||||||||| ||| || |||||||| ||||||| ||||||||||||||| ||||| ||| |||    
T  18055892 cagctatgaagtttcacaattatgttgtgcttatccaagacataaaggagctgtttgatcatgtgaatgtcactatttatcatactttgagagaagagaa 18055991  T
Q  383 tcaatgtgctaattttatggccaagattggagcatcct 420  Q
    ||||| ||| |||||| |||||||| ||  ||||||||    
T  18055992 tcaatatgcaaattttttggccaagcttaaagcatcct 18056029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 448
Target Start/End: Complemental strand, 5214228 - 5214083
Alignment:
Q  303 tatgcagtgttgattcaagacataaaagagttgcttgatcatatgaatgttactatttatcatactctgagataagggaatcaatgtgctaattttatgg 402  Q
    ||||||||  |||| ||||||| |||  ||||| |||| | | ||||||| ||||||  ||||||| ||||| ||||||| |||||||| ||||||||||    
T  5214228 tatgcagtactgatccaagacaaaaagaagttgtttgaccttttgaatgtcactattcgtcatactttgagagaagggaaccaatgtgcgaattttatgg 5214129  T
Q  403 ccaagattggagcatccttgcatattgatttatgccatcatacatc 448  Q
    ||||| ||  |||||||||  ||||||| |||||| ||||| ||||    
T  5214128 ccaagcttaaagcatcctttgatattgacttatgctatcatgcatc 5214083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 675 - 719
Target Start/End: Complemental strand, 37853323 - 37853279
Alignment:
Q  675 tattttaatgttattaattattttgactaacaaagtgcacaatca 719  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||    
T  37853323 tattttagtgttattgactattttgactaacaaagtgcacaatca 37853279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 732
Target Start/End: Original strand, 2707777 - 2707816
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactattttga 732  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  2707777 tattttgactaacaaagtgtacaatcagagactattttga 2707816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 438 - 519
Target Start/End: Original strand, 43838561 - 43838642
Alignment:
Q  438 catcatacatctcctccagaaagccttcggagtctcttgaggattgatgcggccggaactatcttttctagagaatagtttg 519  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||    
T  43838561 catcatacatctcctccagaaggctttcggagtctctcgaggattgatgcggccgaaactattttttctatagaatagtttg 43838642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 424 - 516
Target Start/End: Complemental strand, 51989882 - 51989790
Alignment:
Q  424 atattgatttatgccatcatacatctcctccagaaagccttcggagtctcttgaggattgatgcggccggaactatcttttctagagaatagt 516  Q
    |||||||| ||||||| ||| ||||||||||| || | ||||||||||||||||||||||||||   || |||||| |||||||  |||||||    
T  51989882 atattgatatatgccaccatgcatctcctccataaggtcttcggagtctcttgaggattgatgccttcgaaactattttttctaaggaatagt 51989790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 732
Target Start/End: Complemental strand, 8779057 - 8779018
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactattttga 732  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  8779057 tattttaactaacaaagtgcacaatcagaaactattttga 8779018  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 433
Target Start/End: Complemental strand, 25117343 - 25117213
Alignment:
Q  303 tatgcagtgttgattcaagacataaaagagttgcttgatcatatgaatgttactatttatcatactctgagataagggaatcaatgtgctaattttatgg 402  Q
    ||||||||||||||||||||||| || ||  |  ||||||| || ||||||||||| | ||||||||| ||| || |||| ||||||||  | | | |||    
T  25117343 tatgcagtgttgattcaagacatcaaggaacttattgatcaaattaatgttactatatgtcatactctaagagaatggaaccaatgtgcagactctttgg 25117244  T
Q  403 ccaagattggagcatccttgcatattgattt 433  Q
    ||||| ||||||| ||||   ||||||||||    
T  25117243 ccaagcttggagcttcctcatatattgattt 25117213  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 732
Target Start/End: Complemental strand, 14669338 - 14669299
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactattttga 732  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  14669338 tattttgactaacatagtgcacaatcagagactattttga 14669299  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 730
Target Start/End: Original strand, 23474756 - 23474811
Alignment:
Q  675 tattttaatgttattaattattttgactaacaaagtgcacaatcagatactatttt 730  Q
    |||||||||||||| ||||||||  ||||||||| |||| ||||||| ||||||||    
T  23474756 tattttaatgttataaattatttacactaacaaaatgcataatcagagactatttt 23474811  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 731
Target Start/End: Original strand, 12849719 - 12849757
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactattttg 731  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  12849719 tatttcgactaacaaagtgcacaatcagagactattttg 12849757  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 32996503 - 32996540
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  32996503 tattttgattaacaaagtgcacaatcagagactatttt 32996540  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 40355071 - 40355108
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  40355071 tattttgactaacatagtgcacaatcagagactatttt 40355108  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 46720018 - 46720055
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  46720018 tattttgactaacaaagtgcacaatcaaataccatttt 46720055  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 34294106 - 34294143
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  34294106 tattttgactaacaaagtgcacaatcatatactatttt 34294143  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 730
Target Start/End: Complemental strand, 47944390 - 47944351
Alignment:
Q  691 attattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  47944390 attattttgactaacaaagtgcacaatcaaagactatttt 47944351  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 731
Target Start/End: Original strand, 30843805 - 30843843
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactattttg 731  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  30843805 tattttgattaacaaagtgcacaatcagagactattttg 30843843  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 6788487 - 6788524
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  6788487 tattctgactaacaaagtgcacaatcagaaactatttt 6788524  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 19206503 - 19206540
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  19206503 tattttgactaacaaagtgcataatcagaaactatttt 19206540  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 20966217 - 20966254
Alignment:
Q  693 tattttgactaacaaagtgcacaatcagatactatttt 730  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  20966217 tattttgactaacaaagtgcacaatcaaagactatttt 20966254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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