View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5075-Insertion-2 (Length: 466)
Name: NF5075-Insertion-2
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075-Insertion-2 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 466
Target Start/End: Original strand, 22933556 - 22934015
Alignment:
| Q |
7 |
acaaatctcccaaattaaaacctccagcaactctggtggattcccataccaatgatatgaatttcttgttatccttgcactccttcccaaaggctaccct |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933556 |
acaaatctcccaaattaaaacctccagcactcctggtggattcccataccaatgatatgaatttcttgttatccttgcactccttcccaaaggctaccct |
22933655 |
T |
|
| Q |
107 |
tgaagtgattaaaaatattcttgaaaacacttctttggtgagattaatttctgatccttcttttgaagctatccatttgataagattagtcatctcttcg |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933656 |
tgaagtgattaaaaatattcttgaaaaaacttctttggtgagattaatttctgatccttcttttgaagctatccatttgataagattagtcatctcttcg |
22933755 |
T |
|
| Q |
207 |
gctcgaattggttgaaaagattgaacacgttttgaacttaaaagttctagtgcacaaattttcctaagttgtctccaataatcaccataaggtgcaaaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22933756 |
gctcgaattggttgaaaagattgaacacgttttgaacttaaaagttctagtgcacaaatttttctaagttgtctccaataatcaccataaggtgaaaaag |
22933855 |
T |
|
| Q |
307 |
acataccaatagaattataactcattatctttgaagcttggattggaggccttgatgcaaagacaagatcatgtgttttcaacacttctttagcatattc |
406 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933856 |
acaaaccaatagaattataactcattatctttgaagcttggataggaggccttgatgcaaagacaagatcatgtgttttcaacacttctttagcatattc |
22933955 |
T |
|
| Q |
407 |
tgcagatgaaaccacaatagtagaaacttctccaagctttagatgcattaaaggtccata |
466 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933956 |
tgctgatgataccacaatagtagaaacttctccaagctttagatgcattaaaggtccata |
22934015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 466
Target Start/End: Complemental strand, 22914535 - 22914076
Alignment:
| Q |
7 |
acaaatctcccaaattaaaacctccagcaactctggtggattcccataccaatgatatgaatttcttgttatccttgcactccttcccaaaggctaccct |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| || || |
|
|
| T |
22914535 |
acaaatctcccaaattaaaacctccagcaactctggtggcttcccataccaatgatatgaattttttattatccttgcactccttcccaaaggcaactct |
22914436 |
T |
|
| Q |
107 |
tgaagtgattaaaaatattcttgaaaacacttctttggtgagattaatttctgatccttcttttgaagctatccatttgataagattagtcatctcttcg |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22914435 |
tgaagtgattaaaaatattcttgaattcacttctttggtgagattaatttctgatccttcctttgaagctatccatttgattagattagtcatctcttcg |
22914336 |
T |
|
| Q |
207 |
gctcgaattggttgaaaagattgaacacgttttgaacttaaaagttctagtgcacaaattttcctaagttgtctccaataatcaccataaggtgcaaaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22914335 |
cttcgaattggttgaaaagattgaacacgttttgaacttaaaagttctagtgcacaaatttttctaagttgtctccaataatcaccataaggtgaaaaag |
22914236 |
T |
|
| Q |
307 |
acataccaatagaattataactcattatctttgaagcttggattggaggccttgatgcaaagacaagatcatgtgttttcaacacttctttagcatattc |
406 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914235 |
acaaaccaatagaattataactcattatctttgaagcttggataggaggccttgatgcaaagacaagatcatgtgttttcaacacttctttagcatattc |
22914136 |
T |
|
| Q |
407 |
tgcagatgaaaccacaatagtagaaacttctccaagctttagatgcattaaaggtccata |
466 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22914135 |
tgctgatgataccacaatagtagaaacttctccaagctttagatgcattaagggtccata |
22914076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 60 - 466
Target Start/End: Complemental strand, 22939889 - 22939483
Alignment:
| Q |
60 |
gatatgaatttcttgttatccttgcactccttcccaaaggctacccttgaagtgattaaaaatattcttgaaaacacttctttggtgagattaatttctg |
159 |
Q |
| |
|
||||||||||||| || || || |||| |||||||||||| ||||||||||||| | | ||| ||||||| ||||||||||| | ||| |||| || |
|
|
| T |
22939889 |
gatatgaatttctgattttctttacactttttcccaaaggctgtccttgaagtgattgtagaaattgttgaaaaaacttctttggtaaaattgatttgtg |
22939790 |
T |
|
| Q |
160 |
atccttcttttgaagctatccatttgataagattagtcatctcttcggctcgaattggttgaaaagattgaacacgttttgaacttaaaagttctagtgc |
259 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||||| | |||||| || |||||||||||||||||| ||||||||||||||||| || || |||| |
|
|
| T |
22939789 |
atccttctttagaagatatccacttgattagattagttacctcttcacttctaattggttgaaaagattggacacgttttgaacttaatagctcaagtgt |
22939690 |
T |
|
| Q |
260 |
acaaattttcctaagttgtctccaataatcaccataaggtgcaaaagacataccaatagaattataactcattatctttgaagcttggattggaggcctt |
359 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22939689 |
acaaatttttctaaggtttctccaataatcaccataaggtgcaaaagctaaaccaagagaatcataactcatgatctttgaagcttggattggaggcctt |
22939590 |
T |
|
| Q |
360 |
gatgcaaagacaagatcatgtgttttcaacacttctttagcatattctgcagatgaaaccacaatagtagaaacttctccaagctttagatgcattaaag |
459 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22939589 |
gatgcaaagacaagatcatggtttttcatcacttcttttgcatattcagctgatgaaaccacaatagtagaaacttctccaagctttagatgcattaatg |
22939490 |
T |
|
| Q |
460 |
gtccata |
466 |
Q |
| |
|
||||||| |
|
|
| T |
22939489 |
gtccata |
22939483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 22947532 - 22947614
Alignment:
| Q |
224 |
agattgaacacgttttgaacttaaaagttctagtgcacaaattttcctaagttgtctccaataatcaccataaggtgcaaaag |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | |||||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22947532 |
agattgaacacgttttatgcttaaaagttcaacggtacaaatctttctaagttgtctccaataatcaccataaggtgaaaaag |
22947614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 22987298 - 22987346
Alignment:
| Q |
258 |
gcacaaattttcctaagttgtctccaataatcaccataaggtgcaaaag |
306 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22987298 |
gcacaaatctttctaagttgtctccaataatcaccataaggtgaaaaag |
22987346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 22973374 - 22973452
Alignment:
| Q |
228 |
tgaacacgttttgaacttaaaagttctagtgcacaaattttcctaagttgtctccaataatcaccataaggtgcaaaag |
306 |
Q |
| |
|
|||||||||||| |||||||||||| | | |||||| || ||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
22973374 |
tgaacacgttttatacttaaaagttcaacggtacaaatctttctaagctgtctccaataatcaccatatggtgaaaaag |
22973452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 466
Target Start/End: Original strand, 23018385 - 23018575
Alignment:
| Q |
276 |
tgtctccaataatcaccataaggtgcaaaagacataccaatagaattataactcattatctttgaagcttggattggaggccttgatgcaaagacaagat |
375 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||| | ||||| ||| |||||| | |||| ||| | |||||||| ||||||| || || |
|
|
| T |
23018385 |
tgtctccaataatcaccataaggagaaaaagagatacttgtggaattgtaagacattatatcgatagctaggactttaggccttgttgcaaagtgaatat |
23018484 |
T |
|
| Q |
376 |
catgtgttttcaacacttctttagcatattctgcagatgaaaccacaatagtagaaacttctccaagctttagatgcattaaaggtccata |
466 |
Q |
| |
|
|||| ||||||| || || || ||| | || || ||||||| ||||||||||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
23018485 |
catgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccata |
23018575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 23611363 - 23611411
Alignment:
| Q |
258 |
gcacaaattttcctaagttgtctccaataatcaccataaggtgcaaaag |
306 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23611363 |
gcacaaatctttctaagttgtctccaataatcaccataaggtgaaaaag |
23611411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 14307476 - 14307524
Alignment:
| Q |
258 |
gcacaaattttcctaagttgtctccaataatcaccataaggtgcaaaag |
306 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14307476 |
gcacaaatctttctaagttgtctccaataatcaccataaggtgaaaaag |
14307524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University