View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5075-Insertion-4 (Length: 397)
Name: NF5075-Insertion-4
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 42911723 - 42911336
Alignment:
| Q |
8 |
gaaacaacttacaattgttaatgaataaaaaagagttttgtggaacgtggatgaacatagaagttaaatatccaatgtactgctactaagaggaaaggat |
107 |
Q |
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| T |
42911723 |
gaaacaactcacaattgttaatgaattaagaagagttttgtggaacgtggatgaacatagaagttaaatatccaatgtactgctactaagaggaaaggat |
42911624 |
T |
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| Q |
108 |
taaaaa-tgtggtaagtacgagggtttggcggaagaattaaatgcgttgaggagggagacaataatttgaagaatgtcaatggaataagagatggtcatg |
206 |
Q |
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| T |
42911623 |
taaaaaatgtggtaagtacgagggtttggcggaagaattaaatgcgttgaggagggagacaataatttgaagaatgtcaatggaataagagatggtcatg |
42911524 |
T |
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| Q |
207 |
aaaggtccaagaagtaaaagccaaaacactggcaatgttttggtccccaccgaattgtgacttccaaaaacaaagtggtagagtagaggagagaatctca |
306 |
Q |
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| T |
42911523 |
aaaggtccaagaagtaaaagccaaaacactggcaatg-tttggtccccaccgaattgtgacttccaaaaacaaagtggtagagtagag--gagaatctca |
42911427 |
T |
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| Q |
307 |
cacagctttggagtttgtgtgtgtattggtcaatccttccacttgcagccgtaggctttacagcaatgcaactcaatttctcttccatccg |
397 |
Q |
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| T |
42911426 |
cacagctttggagtttgtgtgtgtattggtcaatccttccacttgcagccgtaggctttacagcaatgtaacgcaatttctcttccatccg |
42911336 |
T |
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