View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5075-Insertion-5 (Length: 220)
Name: NF5075-Insertion-5
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075-Insertion-5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 41127553 - 41127339
Alignment:
| Q |
6 |
caaagagtacaggtacacatatgacataatttagatcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgac |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41127553 |
caaagagtacaggtacacatatcacataatttagatcctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgac |
41127454 |
T |
|
| Q |
106 |
aaatcaacataaccagctccctctggaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgg |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
41127453 |
aaatcaacataaccagctccctctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccag |
41127354 |
T |
|
| Q |
206 |
gacaaattctcctcc |
220 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41127353 |
gacaaattctcctcc |
41127339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 2321647 - 2321461
Alignment:
| Q |
29 |
acataatttagatcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctc |
128 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||| | |||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
2321647 |
acataatctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggcca---ccctc |
2321551 |
T |
|
| Q |
129 |
tggaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgggacaaattctcct |
218 |
Q |
| |
|
|||| || |||||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
2321550 |
cggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctcct |
2321461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 2327500 - 2327314
Alignment:
| Q |
29 |
acataatttagatcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctc |
128 |
Q |
| |
|
||||||| || || ||| |||||||||||||||||| | |||||||||| ||||||||||||||| |||||| |||||||| |||| ||| ||||| |
|
|
| T |
2327500 |
acataatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggcca---ccctc |
2327404 |
T |
|
| Q |
129 |
tggaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgggacaaattctcct |
218 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2327403 |
cggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcct |
2327314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 2351510 - 2351335
Alignment:
| Q |
40 |
atcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctggaatcttcc |
139 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||| ||||| |||||||| |||||||||||||||||||| ||| || ||||||| ||||| |
|
|
| T |
2351510 |
atcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccacct---tctggaaccttcc |
2351414 |
T |
|
| Q |
140 |
aattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgggacaaattctcct |
218 |
Q |
| |
|
||| |||||||| ||||||||||||||||| |||||||| || | |||||||||||||||||||||||| |||||||| |
|
|
| T |
2351413 |
aatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcct |
2351335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 2294332 - 2294149
Alignment:
| Q |
29 |
acataatttagatcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctc |
128 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| | |||||||||| |||| ||||||||| | |||||| ||||||||||| || ||||| |
|
|
| T |
2294332 |
acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccg---ccctc |
2294236 |
T |
|
| Q |
129 |
tggaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgggacaaattct |
215 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2294235 |
tggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattct |
2294149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 2310663 - 2310480
Alignment:
| Q |
29 |
acataatttagatcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctc |
128 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| | |||||||||| |||| |||||||| | |||||| ||||||||||| || ||||| |
|
|
| T |
2310663 |
acataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccg---ccctc |
2310567 |
T |
|
| Q |
129 |
tggaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgggacaaattct |
215 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2310566 |
tggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattct |
2310480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 2303945 - 2303759
Alignment:
| Q |
29 |
acataatttagatcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctc |
128 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| | |||||||||| |||| ||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
2303945 |
acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccg---ccctc |
2303849 |
T |
|
| Q |
129 |
tggaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgggacaaattctcct |
218 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||| | | |||||||||||||| |
|
|
| T |
2303848 |
tggaagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcct |
2303759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 220
Target Start/End: Complemental strand, 2331207 - 2331027
Alignment:
| Q |
37 |
tagatcctaggagaaatatgaacttgcagttgatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctggaatct |
136 |
Q |
| |
|
|||||||| |||||||||||| | |||| | |||||||||| |||| |||||||| ||| || ||||||||||| |||| ||||| |||| || |
|
|
| T |
2331207 |
tagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgacca---ccctcgggaacct |
2331111 |
T |
|
| Q |
137 |
tccaattaaaattccagaccaaattagccacaaagtattccaaatggaccaaagctaaattatatccgggacaaattctcctcc |
220 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
2331110 |
tccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcc |
2331027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University