View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5075_high_4 (Length: 358)
Name: NF5075_high_4
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 351
Target Start/End: Original strand, 6662817 - 6663147
Alignment:
| Q |
5 |
aaaccaaaatgacaaatcaaaaagtgcagcaaataatgatctcttaggggtcttacagaataaactacttcaacagcattaaacaacaaccgaacaagat |
104 |
Q |
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| T |
6662817 |
aaaccaaaatgatacatcaaaaagtgcagcaaatgatgatctcttaggggtcttacagaataaactacttcaacagcgttaaacaacaaccgaacaagat |
6662916 |
T |
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| Q |
105 |
catctttttcggaactatcaaatccagaaaacactttgctctgcaaggtaccttgaatcctactacaagtttcagcaaacgatctacaagaacaaaaatc |
204 |
Q |
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| T |
6662917 |
catctttttcggcactatcaaatccagaaaacactttgctctgcaaggtaccttgaatccttctacaagtttcagcaaacgatctacaagaacaaaaatc |
6663016 |
T |
|
| Q |
205 |
acccaataaaaacacaagtcaattcaaagttgcaaatttgcaacgcaactcaaatgtcagcaattcaacnnnnnnncccataaacaattttcacttactc |
304 |
Q |
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| T |
6663017 |
acccaataaaaacacaagtcaattcaaagttgcaaatttgcaacgcaattcaa-------caa---aa------aacccataaacaattctcacttactc |
6663100 |
T |
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| Q |
305 |
cgccacactcacaacagtaacaccctcaagaacacctctaacaccaa |
351 |
Q |
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| T |
6663101 |
cgccacactcgcaacagtaacaccctcaagaacacctctaacaccaa |
6663147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 49314829 - 49315056
Alignment:
| Q |
20 |
atcaaaaagtgcagcaaataatgatctcttaggggtcttacagaataaactacttcaacagcattaaacaacaaccgaacaagatcatctttttcggaac |
119 |
Q |
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| T |
49314829 |
atcaaaaagtgcaacaaacaaggatctcaaaggggtcttacagaataaaccacttcaacagcattgaataacaaacaaacaagatcatccttttcagaac |
49314928 |
T |
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| Q |
120 |
tatcaaatccagaaaacactttgctctgcaaggtaccttgaatcctactacaagtttcagcaaacgatctacaagaacaaaaatcacccaataaaaacac |
219 |
Q |
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| T |
49314929 |
cagcaattccagagaacactttgctctgcaacgcactttgaatcctagtacaagtttcagcaaaagatctacaagaacaaaaatcaatcaataaaaacat |
49315028 |
T |
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| Q |
220 |
aagtcaattcaaagttgcaaatttgcaa |
247 |
Q |
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| T |
49315029 |
aagccaatttaaagttgcaattttgcaa |
49315056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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