View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5075_high_5 (Length: 356)
Name: NF5075_high_5
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 11044274 - 11044561
Alignment:
| Q |
1 |
agcctggaagtaaaaaatagggccataagaaattaagaataatgcacaaccttttctttttcaaatttatcagcaatgatgttacgaaaattaagaaaaa |
100 |
Q |
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| T |
11044274 |
agcctggaaataaaaaatagggccataagaaattaagaataatgcacaaccttttctttttcaaatttatcagcaatgatggtacgaaaattaagaaaaa |
11044373 |
T |
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| Q |
101 |
ggccatatattaaaagcataccttgaccttgcgtgcacgacgtgggaagacaaccaacttggccttgtatgtcttcagcctctggacgttggcttgcaga |
200 |
Q |
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| T |
11044374 |
ggccatatattaaaagcataccttgaccttgcgtgcacgacgtgggaagacaaccaacttggccttgtatgtcttcagcctctggacgttggcttgcaga |
11044473 |
T |
|
| Q |
201 |
ccttccaacgatcggttcttgcggcgatgatcaatggaaatgccaatagttggagcaagctttttgggaatacctgcagcctacattg |
288 |
Q |
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| T |
11044474 |
ccttccaacgatcggttcttgcggcgatgatcgatggaaatgccgatagttggagcaagctttttgggaatacctgcagcctacattg |
11044561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 45810774 - 45810470
Alignment:
| Q |
1 |
agcctggaagtaaaaaatagggccataagaaattaagaataatgcacaaccttttctttttcaaatttatcagcaatgatgttacgaaaattaagaaaaa |
100 |
Q |
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||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||| |||| |
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| T |
45810774 |
agcctggaaataaaaaacagggccgtaagaaattaagaataatgcacaactttttctttttcaaatttattagcaatgacagtaccaaaattaaggaaaa |
45810675 |
T |
|
| Q |
101 |
ggccatatattaaaagcata------------------ccttgaccttgcgtgcacgacgtgggaagacaaccaacttggccttgtatgtcttcagcctc |
182 |
Q |
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| T |
45810674 |
ggtcatatattaaaagaatatagccgcaatttgcattaccttgaccttgcgtgcacgtcttgggaagacaaccaacttggccttgtatgtcttcagcctc |
45810575 |
T |
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| Q |
183 |
tggacgttggcttgcagaccttccaacgatcggttcttgcggcgatgatcaatggaaatgccaatagttggagcaagctttttgggaatacctgcagcct |
282 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45810574 |
tgcacgttggcttgcagaccttccaatgatcggttcttgcggcgatgatcgacagaaatgccaatagttggagcaagctttttgggaatacctgcagact |
45810475 |
T |
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| Q |
283 |
acatt |
287 |
Q |
| |
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||||| |
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| T |
45810474 |
acatt |
45810470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 6902475 - 6902312
Alignment:
| Q |
119 |
taccttgaccttgcgtgcacgacgtgggaagacaaccaacttggccttgtatgtcttcagcctctggacgttggcttgcagaccttccaacgatcggttc |
218 |
Q |
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||||||| ||||||||| || | |||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || |||||| |
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| T |
6902475 |
taccttggtcttgcgtgcgcgccttgggaaaacaaccaacttggccttgtatgttttcagcctctgcacattagcttgcagaccctccaaagaacggttc |
6902376 |
T |
|
| Q |
219 |
ttgcggcgatgatcaatggaaatgccaatagttggagcaagctttttgggaatacctgcagcct |
282 |
Q |
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||||||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||||||| |
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| T |
6902375 |
ttgcggcgatggtcaacagaaatgccgatggttggagcaagcttcttggggatacctgcagcct |
6902312 |
T |
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