View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5075_high_6 (Length: 347)
Name: NF5075_high_6
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 342
Target Start/End: Original strand, 3632272 - 3632612
Alignment:
| Q |
2 |
acatggatatagtacagtaatgctaatggtttgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaa |
101 |
Q |
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| T |
3632272 |
acatggatatagtacaataatgctaatggtttgcaaatggtacagtactacttatttttgcttcatattgaaaatcattctctgtttgtatttaattcaa |
3632371 |
T |
|
| Q |
102 |
tttgattttcacccgttacattttagtttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgaaaccttctcttcttt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3632372 |
tttgattttcacccgttacattttagtttatcattcaattctgatagtcccttgtgattgttatattagttacattttttgctgacaccttctcttcttt |
3632471 |
T |
|
| Q |
202 |
gaaacgaacaaggatttggcaccttctcccaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggatacaggagttgccatt |
301 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3632472 |
gaaacgaacaaggatttggcaccttctccaaaatatggtattgatgtcaaagacgtcgatgtattatcaagggaagaaggtggatacaggagttgccatt |
3632571 |
T |
|
| Q |
302 |
tattcttatctggaagcgatagttcatctctctgtggtgct |
342 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
3632572 |
tattcttatctggaagtgatagttcatctctcagtgttgct |
3632612 |
T |
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