View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5075_high_7 (Length: 327)
Name: NF5075_high_7
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 21565149 - 21564835
Alignment:
| Q |
1 |
ctgggtgtgaaacccaaagaaccaactcaatcttgcagagacagtttgctagatgttcgattcttaacaaatttcaatgcaatctgcaattgcacaatgg |
100 |
Q |
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| T |
21565149 |
ctggatgttaaacccaaagaaccaactcaatcttgtagagacagtttgctagatgtttgattcttaacaaatttcaatgcaatctgcgattgcacaatgg |
21565050 |
T |
|
| Q |
101 |
tcacttcttttctttaaataactgaaactagaataatttttccatccattttaggacaacaaaatgatttggatttaatagattaaatttaaggttttat |
200 |
Q |
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| T |
21565049 |
tcacttcttttctccaaataactgaaacta--ataatttttccatctattttaggacaacaaaatgatttggatttaatagattaaatttaaggttttat |
21564952 |
T |
|
| Q |
201 |
tagattgattaatgctagaaatgggcatattgaagggatttgtgggtagttaaaggaaggagggggttttcgagcaagagattgtggtctttgaggggta |
300 |
Q |
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| T |
21564951 |
tagattgattaatgctagaaatgggcatattgaagggatttgtggatagttaaaggaagaagggggttttcgagc-agagattgtggtctttgaggggta |
21564853 |
T |
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| Q |
301 |
agactgctggctctgtgg |
318 |
Q |
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| T |
21564852 |
agactgctggctctgtgg |
21564835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 13414921 - 13415022
Alignment:
| Q |
90 |
ttgcacaatggtcacttcttttctttaaataactgaaactagaataatttttccatccattttaggacaacaaaatgatttggatttaatagattaaatt |
189 |
Q |
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|||||||||| || |||||||||||| |||||| | ||||||||| | |||||| |||| | ||| ||| ||| ||||||||||||| |||||||| |
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| T |
13414921 |
ttgcacaatgatcgcttcttttctttgaataaccggaactagaatctctcttccattcattgttagacgacataatattttggatttaataaattaaatt |
13415020 |
T |
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| Q |
190 |
ta |
191 |
Q |
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| T |
13415021 |
ta |
13415022 |
T |
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