View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5075_low_1 (Length: 308)
Name: NF5075_low_1
Description: NF5075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5075_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 27003751 - 27004032
Alignment:
| Q |
18 |
agcccatgcagccccagcaatcccatagcctaagtatctgcacagaattatatcaccaattccatttataatactggcagcagccaaagccttcaagggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27003751 |
agcccatgcagccccagcaatcccatagcctaagtatctgcacagaattatatcaccaattccatttataatactggcagcggccaaagccttcaagggt |
27003850 |
T |
|
| Q |
118 |
ccccaagaatctttcataccaagactgcatgaaaaaatgtgaataccaataatatgaattaaatgataacccaatagtta---taatatttattaatttg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
27003851 |
ccccaagaatctttcataccaagactgcatgaaaaaatgtggataccaataatatgaattaaatgataacccaataattatactaatatttattaatttg |
27003950 |
T |
|
| Q |
215 |
aaaatcataaaaagtgacagtttactaaatacttaaactattctcagggtaaaaaacactttgctcaaacagttcaaagaat |
296 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27003951 |
aaaatcataaaaagtaacagtttactaaatacttaaactattctcagggtaaaaaacactttgctcaaacagttcaaagaat |
27004032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 26989155 - 26989375
Alignment:
| Q |
18 |
agcccatgcagccccagcaatcccatagcctaagtatctgcacagaattatatcaccaattccatttataatactggcagcagccaaagccttcaagggt |
117 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26989155 |
agcccatgcagccccagcaatcccatagtttaaatatctgcacagaattatatcaccaattccatttataatactggcagcagccaaagccttcaagggt |
26989254 |
T |
|
| Q |
118 |
ccccaagaatctttcataccaagactgcatgaaaaaatgtgaataccaataatatgaattaaatgataacccaatagttataatatttattaatttgaaa |
217 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||| |||||||||| ||||||| ||||||| || || |
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| T |
26989255 |
ccccaagaatctttcataccaagactgcgtgaaagaatgtcgataccaagaatatgaattaaatgacaacccaatag-tataata-ttattaaattttaa |
26989352 |
T |
|
| Q |
218 |
atcataaaaagtgacagtttact |
240 |
Q |
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||||||||||| |||||||||| |
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| T |
26989353 |
atcataaaaagccacagtttact |
26989375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 26978493 - 26978285
Alignment:
| Q |
18 |
agcccatgcagccccagcaatcccatagcctaagtatctgcacagaattatatcaccaattccatttataatactggcagcagccaaagccttcaagggt |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||| |||| |
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|
| T |
26978493 |
agcccaagcagccccagcaatcccatagcctaaatatctgcacagaatgatgtcaccaattccatttataatactagcaacagccaaagccttcaggggt |
26978394 |
T |
|
| Q |
118 |
ccccaagaatctttcataccaagactgcatgaaaaaatgtgaataccaataatatgaattaaatgataacccaatagttataatatttattaatttgaaa |
217 |
Q |
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|
|||||||| ||||||||||||||||||| ||| |||||||| ||| ||| |||||||||||||||| ||||||||| |||| || ||| |||||| ||| |
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|
| T |
26978393 |
ccccaagagtctttcataccaagactgcgtgataaaatgtggataacaagaatatgaattaaatgagaacccaatatttatgat-gttactaattt-aaa |
26978296 |
T |
|
| Q |
218 |
atcataaaaag |
228 |
Q |
| |
|
||||||||||| |
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|
| T |
26978295 |
atcataaaaag |
26978285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 26951907 - 26952053
Alignment:
| Q |
18 |
agcccatgcagccccagcaatcccatagcctaagtatctgcacagaattatatcaccaattccatttataatactggcagcagccaaagccttcaagggt |
117 |
Q |
| |
|
||||||||| ||||| || || ||||||||||| | ||||| | || ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
26951907 |
agcccatgctgcccccgctataccatagcctaaacagctgcataaaagtatatcaccaattccatttataacactggcagcagccaaagcctttaagggt |
26952006 |
T |
|
| Q |
118 |
ccccaagaatctttcataccaagactgcatgaaaaaatgtgaatacc |
164 |
Q |
| |
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||||| ||||||||||||||||| ||||| ||| |||||||||||| |
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|
| T |
26952007 |
ccccatgaatctttcataccaaggctgcaagaatgaatgtgaatacc |
26952053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 26944172 - 26944302
Alignment:
| Q |
19 |
gcccatgcagccccagcaatcccatagcctaagtatctgcacagaattatatcaccaattccatttataatactggcagcagccaaagccttcaagggtc |
118 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || |||||| || ||||||||||| |||||||||| |||||||||||| ||||| |||||||||| |
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| T |
26944172 |
gcccatgcagcccctgcaattccatagcctaaataggtgcacaaaactatatcaccaacaccatttataacactggcagcagctaaagctttcaagggtc |
26944271 |
T |
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| Q |
119 |
cccaagaatctttcataccaagactgcatga |
149 |
Q |
| |
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|||| ||||||||||||||||||||| |||| |
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|
| T |
26944272 |
cccaggaatctttcataccaagactgtatga |
26944302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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