View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076-Insertion-1 (Length: 665)

Name: NF5076-Insertion-1
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076-Insertion-1
NF5076-Insertion-1
[»] chr2 (12 HSPs)
chr2 (7-325)||(3220445-3220763)
chr2 (11-160)||(12504879-12505032)
chr2 (11-160)||(14680894-14681047)
chr2 (41-160)||(39587523-39587646)
chr2 (262-324)||(12505163-12505225)
chr2 (262-324)||(14680701-14680763)
chr2 (262-324)||(39587777-39587839)
chr2 (325-377)||(3228271-3228323)
chr2 (215-268)||(12505091-12505144)
chr2 (215-268)||(14680782-14680835)
chr2 (215-268)||(39587705-39587758)
chr2 (326-377)||(3338651-3338702)
[»] chr1 (10 HSPs)
chr1 (7-164)||(52887861-52888022)
chr1 (7-159)||(29887107-29887263)
chr1 (11-160)||(52608987-52609140)
chr1 (263-324)||(52608794-52608855)
chr1 (262-324)||(52888149-52888210)
chr1 (215-268)||(52608875-52608928)
chr1 (215-268)||(52888077-52888130)
chr1 (26-130)||(13728701-13728805)
chr1 (262-302)||(29887395-29887435)
chr1 (224-268)||(29887332-29887376)
[»] scaffold0014 (6 HSPs)
scaffold0014 (11-160)||(173672-173825)
scaffold0014 (11-160)||(143878-144031)
scaffold0014 (262-324)||(144162-144224)
scaffold0014 (262-324)||(173956-174018)
scaffold0014 (215-268)||(173884-173937)
scaffold0014 (215-268)||(144090-144143)
[»] chr8 (8 HSPs)
chr8 (11-160)||(44198056-44198209)
chr8 (11-160)||(20793598-20793751)
chr8 (23-160)||(23928942-23929083)
chr8 (262-324)||(23928749-23928811)
chr8 (262-324)||(44198340-44198402)
chr8 (215-268)||(23928830-23928883)
chr8 (215-268)||(44198268-44198321)
chr8 (215-262)||(20793810-20793857)
[»] chr7 (15 HSPs)
chr7 (11-160)||(3718203-3718356)
chr7 (11-160)||(48513409-48513562)
chr7 (11-160)||(48727851-48728004)
chr7 (18-160)||(42105311-42105457)
chr7 (262-324)||(42105588-42105650)
chr7 (262-324)||(48513216-48513278)
chr7 (262-324)||(3718010-3718072)
chr7 (262-324)||(48727658-48727720)
chr7 (215-268)||(42105516-42105569)
chr7 (215-268)||(48513297-48513350)
chr7 (215-268)||(48727739-48727792)
chr7 (215-268)||(3718091-3718144)
chr7 (32-84)||(34529808-34529860)
chr7 (32-84)||(45574882-45574934)
chr7 (35-84)||(17990443-17990492)
[»] chr6 (3 HSPs)
chr6 (11-160)||(29651933-29652086)
chr6 (263-324)||(29652218-29652279)
chr6 (215-268)||(29652145-29652198)
[»] chr5 (12 HSPs)
chr5 (11-160)||(36678940-36679093)
chr5 (11-160)||(36662685-36662838)
chr5 (7-160)||(43560302-43560465)
chr5 (7-130)||(23203822-23203945)
chr5 (262-324)||(36662969-36663031)
chr5 (263-324)||(36678747-36678808)
chr5 (264-324)||(23198492-23198552)
chr5 (215-268)||(36662897-36662950)
chr5 (215-268)||(36678828-36678881)
chr5 (215-268)||(43560524-43560577)
chr5 (215-268)||(23198573-23198626)
chr5 (129-160)||(23198685-23198716)
[»] chr3 (10 HSPs)
chr3 (11-160)||(38327668-38327821)
chr3 (11-160)||(46073509-46073662)
chr3 (11-160)||(55488803-55488956)
chr3 (262-324)||(46073793-46073855)
chr3 (263-324)||(38327475-38327536)
chr3 (262-324)||(55489087-55489149)
chr3 (215-268)||(38327556-38327609)
chr3 (215-268)||(46073721-46073774)
chr3 (215-268)||(55489015-55489068)
chr3 (32-84)||(35029014-35029066)
[»] scaffold1284 (2 HSPs)
scaffold1284 (7-160)||(246-409)
scaffold1284 (215-268)||(468-521)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 325
Target Start/End: Original strand, 3220445 - 3220763
Alignment:
Q  7 agcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3220445 agcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcgctgctttcgcga 3220544  T
Q  107 ttcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagcaaagaatcttgctcttcccatagttagtgcttcacacg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3220545 ttcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagcaaagattcttgctcttcccatagttagtgcttcacacg 3220644  T
Q  207 aacgcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctcacagggacctaattgaagttgttcttgaagcacttcc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220645 aacgcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctcacagggacctaattgaagttgttcttgaagcacttcc 3220744  T
Q  307 tgaagagtttgaccctatg 325  Q
    |||||||||||||||||||    
T  3220745 tgaagagtttgaccctatg 3220763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 12504879 - 12505032
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  12504879 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 12504978  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  12504979 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 12505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 14681047 - 14680894
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  14681047 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 14680948  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  14680947 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 14680894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 39587523 - 39587646
Alignment:
Q  41 gaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact----cgtggtttggg 136  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||       ||||||||    
T  39587523 gaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctcattcgccacttagggcaggtttggg 39587622  T
Q  137 atgagattcatagttactgcttca 160  Q
    ||||||| |||| |||||||||||    
T  39587623 atgagatccataattactgcttca 39587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 12505163 - 12505225
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12505163 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 12505225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 14680763 - 14680701
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14680763 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 14680701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 39587777 - 39587839
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39587777 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaggagtttgaccctat 39587839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 3228271 - 3228323
Alignment:
Q  325 gattactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3228271 gattactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat 3228323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 12505091 - 12505144
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12505091 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 12505144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 14680835 - 14680782
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  14680835 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 14680782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 39587705 - 39587758
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  39587705 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 39587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 377
Target Start/End: Original strand, 3338651 - 3338702
Alignment:
Q  326 attactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat 377  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  3338651 attactttcttaaatgcatgcatttggctattttttttcgttgattcatgat 3338702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 52887861 - 52888022
Alignment:
Q  7 agcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcga 106  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  52887861 agcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcactactttcgcga 52887960  T
Q  107 ttcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttcatgca 164  Q
    ||||||||||||||||||||||    ||||||||||||||| ||||||||||||||||||||    
T  52887961 ttcgttctccttcgccactcgtggcaggtttgggatgagatccatagttactgcttcatgca 52888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 29887107 - 29887263
Alignment:
Q  7 agcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcga 106  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| || |||||||||    
T  29887107 agcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcaccttcgctactttcgcga 29887206  T
Q  107 ttcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttc 159  Q
    ||||||||||||||||||||||    ||||||||||||||| |||||||||||||||    
T  29887207 ttcgttctccttcgccactcgtggcaggtttgggatgagatccatagttactgcttc 29887263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 52609140 - 52608987
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  52609140 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 52609041  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  52609040 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 52608987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 52608855 - 52608794
Alignment:
Q  263 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52608855 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 52608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 52888149 - 52888210
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52888149 agtctctcacagg-acctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 52888210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 52608928 - 52608875
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52608928 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52608875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 52888077 - 52888130
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52888077 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52888130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 13728701 - 13728805
Alignment:
Q  26 gcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 125  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||| | ||||| |||| | |||| ||||||||||| ||||| || || || ||||    
T  13728701 gcttacaccgaatgggaagaacaagattctctcctttgcacatggattttatcaactatttcgtcttctctgctttcgcgtttcgtgcttctccgtcact 13728800  T
Q  126 cgtgg 130  Q
    |||||    
T  13728801 cgtgg 13728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 29887395 - 29887435
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcac 302  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29887395 agtctctcacagggacctaattgaagttgttcttgaagcac 29887435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 29887332 - 29887376
Alignment:
Q  224 tgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  29887332 tgtcgccgaattcattgctcgaattcgcgcaatttcagagtctct 29887376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 105; Significance: 4e-52; HSPs: 6)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 173672 - 173825
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  173672 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 173771  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  173772 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 143878 - 144031
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |||||| || |||||||| ||||    
T  143878 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctcagcacctggattctttcaacgatctcgccttcgctactttcgcggttcg 143977  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    ||||||||| |||||| |    ||||||||||||||| ||||||||||||||||    
T  143978 ttctccttctccactcttggcaggtttgggatgagatccatagttactgcttca 144031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 144162 - 144224
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144162 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 144224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 173956 - 174018
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  173956 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 174018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 173884 - 173937
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  173884 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 144090 - 144143
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  144090 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 144143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 44198056 - 44198209
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  44198056 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 44198155  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  44198156 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 44198209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 20793598 - 20793751
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| || |||||||||||||    
T  20793598 ggaacggagaatcatgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatatcgccttcgctactttcgcgattcg 20793697  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  20793698 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 20793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 23929083 - 23928942
Alignment:
Q  23 cctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgcc 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||||||    
T  23929083 cctgcttacactgaatgggaagaacaagattcattgctctgcacctgaattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgcc 23928984  T
Q  123 actcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||| |    ||||||||||||||| ||||||||||||||||    
T  23928983 actcatggcaggtttgggatgagatccatagttactgcttca 23928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 23928811 - 23928749
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23928811 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 23928749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 44198340 - 44198402
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44198340 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 44198402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 23928883 - 23928830
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  23928883 ttcacgcactgtcgctgaattcattgctcgaattcgcacaatttcagagtctct 23928830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 44198268 - 44198321
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  44198268 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 44198321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 20793810 - 20793857
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcaga 262  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20793810 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcaga 20793857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 3718356 - 3718203
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  3718356 ggaacgaagaatcctgcttacaccgaatgggaagaacaagattcattgctctgcacctggattctttcaacgattttgccttcgctactttcgcgattcg 3718257  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    ||||||||||||||||||    ||||||||||||||| || |||||||||||||    
T  3718256 ttctccttcgccactcgtggcaggtttgggatgagatccacagttactgcttca 3718203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 48513562 - 48513409
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  48513562 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 48513463  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  48513462 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 48513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 48728004 - 48727851
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  48728004 ggaacggagaatcctgcttacactaaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 48727905  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  48727904 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 48727851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 42105311 - 42105457
Alignment:
Q  18 agaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctcct 117  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||  || ||||||||||||||||||||    
T  42105311 agaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttggctactttcgcgattcgttctcct 42105410  T
Q  118 tcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    ||||||||| |    ||||||||||||||| ||||||||||||||||    
T  42105411 tcgccactcatggcaggtttgggatgagatccatagttactgcttca 42105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 42105588 - 42105650
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105588 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 42105650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 48513278 - 48513216
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48513278 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 48513216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 3718072 - 3718010
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3718072 agtctctcacagggacctaattgaagttgttcttgaagcacttccagaagagtttgaccctat 3718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 48727720 - 48727658
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48727720 agtctctcacagggtcctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 48727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 42105516 - 42105569
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42105516 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 42105569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 48513350 - 48513297
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  48513350 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 48513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 48727792 - 48727739
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  48727792 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 48727739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 3718144 - 3718091
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  3718144 ttcacgcactgtcgttgaattcattgctcgaattcacgcaatttcagagtctct 3718091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 34529860 - 34529808
Alignment:
Q  32 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 84  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  34529860 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 34529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 45574934 - 45574882
Alignment:
Q  32 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 84  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  45574934 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 45574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 17990443 - 17990492
Alignment:
Q  35 gaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 84  Q
    ||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  17990443 gaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 17990492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 29651933 - 29652086
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  29651933 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 29652032  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  29652033 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 29652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 29652218 - 29652279
Alignment:
Q  263 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29652218 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 29652279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 29652145 - 29652198
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29652145 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 29652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 36679093 - 36678940
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  36679093 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 36678994  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  36678993 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 36678940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 36662685 - 36662838
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| || |||||||||||||    
T  36662685 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcggcttcgctactttcgcgattcg 36662784  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  36662785 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 36662838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 43560302 - 43560465
Alignment:
Q  7 agcaggaacgaagaaacctgcttacactgaatgggaaga------acaagattctttgctctgcacctggattctttcaacgatttagccttcactgctt 100  Q
    |||||||||| |||| |||||||||||||||| ||||||      ||||||||| ||||||||||||||||||||||||| ||||| |||||| || |||    
T  43560302 agcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgctactt 43560401  T
Q  101 tcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  43560402 tcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 43560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 23203945 - 23203822
Alignment:
Q  7 agcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcga 106  Q
    |||||||||| |||| |||| ||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||||  || |||||||||    
T  23203945 agcaggaacggagaatcctgtttacactgaatgggaagaacacgattaattgctctacacctggattctttcaacgatttcgcctttgctactttcgcga 23203846  T
Q  107 ttcgttctccttcgccactcgtgg 130  Q
    ||||||||||||||||||||||||    
T  23203845 ttcgttctccttcgccactcgtgg 23203822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 36662969 - 36663031
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36662969 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 36663031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 36678808 - 36678747
Alignment:
Q  263 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678808 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 36678747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 23198552 - 23198492
Alignment:
Q  264 tctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23198552 tctctcatagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 23198492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 36662897 - 36662950
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  36662897 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 36662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 36678881 - 36678828
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  36678881 ttcacgcactgtctctgaattcattgctcgaattcgcgcaatttcagagtctct 36678828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 43560524 - 43560577
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  43560524 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 43560577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 23198626 - 23198573
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| |||||||||||||| || ||||||||||||||||    
T  23198626 ttcacgcactgtcgctgaattcattgctcgaatttgcacaatttcagagtctct 23198573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 160
Target Start/End: Complemental strand, 23198716 - 23198685
Alignment:
Q  129 ggtttgggatgagattcatagttactgcttca 160  Q
    ||||||||||||||||||||||||||||||||    
T  23198716 ggtttgggatgagattcatagttactgcttca 23198685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 38327821 - 38327668
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  38327821 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 38327722  T
Q  111 ttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    |||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  38327721 ttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 38327668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 46073509 - 46073662
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  46073509 ggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcg 46073608  T
Q  111 ttctccttcgccactcgtgg----tttgggatgagattcatagttactgcttca 160  Q
    |||||||| ||||||| |||    ||||||||||||| ||||||||||||||||    
T  46073609 ttctcctttgccactcatggcagatttgggatgagatccatagttactgcttca 46073662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 55488803 - 55488956
Alignment:
Q  11 ggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcg 110  Q
    |||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| || |||||||| ||||    
T  55488803 ggaacggagaattctgcttacactgaatgggaagaacaagattcattgctctgcacctgggttctttcaacgatttcgccttcgctactttcgcggttcg 55488902  T
Q  111 ttctccttcgccactcgtggt----ttgggatgagattcatagttactgcttca 160  Q
    ||||||||||||||||||||     |||||||||||| || |||||||||||||    
T  55488903 ttctccttcgccactcgtggcaggcttgggatgagatccacagttactgcttca 55488956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 46073793 - 46073855
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46073793 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 46073855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 38327536 - 38327475
Alignment:
Q  263 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327536 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 38327475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 55489087 - 55489149
Alignment:
Q  262 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55489087 agtctctcacagggacctaattgaagttgttcttgaagcacttcttgaagagtttgaccctat 55489149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 38327609 - 38327556
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  38327609 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 38327556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 46073721 - 46073774
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  46073721 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaaattcagagtctct 46073774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 55489015 - 55489068
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  55489015 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttctgagtctct 55489068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 35029066 - 35029014
Alignment:
Q  32 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 84  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  35029066 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 35029014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 246 - 409
Alignment:
Q  7 agcaggaacgaagaaacctgcttacactgaatgggaaga------acaagattctttgctctgcacctggattctttcaacgatttagccttcactgctt 100  Q
    |||||||||| |||| |||||||||||||||| ||||||      ||||||||| ||||||||||||||||||||||||| ||||| |||||| || |||    
T  246 agcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgctactt 345  T
Q  101 tcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 160  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  346 tcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 468 - 521
Alignment:
Q  215 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 268  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  468 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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