View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076-Insertion-13 (Length: 146)

Name: NF5076-Insertion-13
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076-Insertion-13
NF5076-Insertion-13
[»] chr7 (12 HSPs)
chr7 (8-146)||(4783337-4783475)
chr7 (8-146)||(4815766-4815904)
chr7 (24-146)||(4653951-4654073)
chr7 (24-146)||(4711590-4711712)
chr7 (24-146)||(4845530-4845652)
chr7 (24-146)||(4637312-4637434)
chr7 (24-146)||(4696708-4696830)
chr7 (8-146)||(4644162-4644288)
chr7 (24-146)||(4864377-4864502)
chr7 (24-146)||(4673158-4673280)
chr7 (24-93)||(4631438-4631507)
chr7 (24-146)||(4667396-4667515)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 6e-66; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 4783337 - 4783475
Alignment:
Q  8 atgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  4783337 atgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctag 4783436  T
Q  108 ttatgcttacattaacggaatcgaagttgtgtctatgcc 146  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4783437 ttatgctttcattaacggaatcgaagttgtgtctatgcc 4783475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 4815766 - 4815904
Alignment:
Q  8 atgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  4815766 atgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctag 4815865  T
Q  108 ttatgcttacattaacggaatcgaagttgtgtctatgcc 146  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4815866 ttatgctttcattaacggaatcgaagttgtgtctatgcc 4815904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 4654073 - 4653951
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 123  Q
    ||||||||||| ||||||| || |||| ||  ||||||||||||||| |||||||||||||||||||||||| |  ||||||  |||||||| ||||||     
T  4654073 caaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaat 4653974  T
Q  124 ggaatcgaagttgtgtctatgcc 146  Q
    ||||| |||||||||||||||||    
T  4653973 ggaattgaagttgtgtctatgcc 4653951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 4711590 - 4711712
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 123  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||| ||||||||| ||||||| ||| || |  ||||||  |||||||| |||||||    
T  4711590 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 4711689  T
Q  124 ggaatcgaagttgtgtctatgcc 146  Q
    ||||||||| |||||||||||||    
T  4711690 ggaatcgaaattgtgtctatgcc 4711712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 4845530 - 4845652
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 123  Q
    ||||||||||| ||| || ||||||||||| | |||||||||||||| |||| |||| ||||||| |||| |||||||||||  |||||||| | |||||    
T  4845530 caaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaac 4845629  T
Q  124 ggaatcgaagttgtgtctatgcc 146  Q
    ||||||||||||||||| |||||    
T  4845630 ggaatcgaagttgtgtcgatgcc 4845652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 4637434 - 4637312
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 123  Q
    ||||||||||| ||| |||||||||||||| || ||| ||||||||| ||||||||| |||| || ||||||||  |||||| |||||||||  ||||||    
T  4637434 caaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaac 4637335  T
Q  124 ggaatcgaagttgtgtctatgcc 146  Q
    || |||||||||||||| |||||    
T  4637334 gggatcgaagttgtgtcaatgcc 4637312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 4696708 - 4696830
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 123  Q
    ||||||||||| ||| |||| ||||||||| |||||| ||||||||| ||||||||||| ||||| |||||| |  ||||||  |||||||| |||||||    
T  4696708 caaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaac 4696807  T
Q  124 ggaatcgaagttgtgtctatgcc 146  Q
    ||||| ||||||||||| |||||    
T  4696808 ggaatagaagttgtgtcaatgcc 4696830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 4644288 - 4644162
Alignment:
Q  8 atgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctag 107  Q
    |||||||| ||||| ||||||| |||| ||||||||| ||| |||| |||||||||||||||| |||||||||| ||| ||           |||  |||    
T  4644288 atgagaataatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccc-acatca-----------aatgttag 4644201  T
Q  108 ttatgcttacattaacggaatcgaagttgtgtctatgcc 146  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgcc 4644162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 4864502 - 4864377
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcc---caacaacacaaaccaattgaatcctagttatgcttacatt 120  Q
    ||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||   ||| || | ||| ||||  ||||||  |||||| | ||||    
T  4864502 caaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcatt 4864403  T
Q  121 aacggaatcgaagttgtgtctatgcc 146  Q
    || ||||| ||||| |||||||||||    
T  4864402 aatggaatagaagtcgtgtctatgcc 4864377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 4673280 - 4673158
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 123  Q
    |||||||| ||  ||||||||||| || || |||||||||||||||| ||||||||| | || ||  ||| |||  |||  ||  ||||||| |||||||    
T  4673280 caaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaac 4673181  T
Q  124 ggaatcgaagttgtgtctatgcc 146  Q
    ||||||||| ||||||| |||||    
T  4673180 ggaatcgaaattgtgtcaatgcc 4673158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 4631507 - 4631438
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaac 93  Q
    ||||||||||| ||| |||||    ||||| |||||||||||||||| |||||||||||| || ||||||    
T  4631507 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 4631438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 4667515 - 4667396
Alignment:
Q  24 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 123  Q
    ||||||||||| |||||| | ||||| |   ||||| ||| || ||| |||||||||||| |||||||||||||| ||| |   || ||||| ||| |||    
T  4667515 caaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaaaaacacaaaccaattaaatgc---ttttgctttcatcaac 4667419  T
Q  124 ggaatcgaagttgtgtctatgcc 146  Q
    ||||| ||  |||||||||||||    
T  4667418 ggaattgagattgtgtctatgcc 4667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University