View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076-Insertion-3 (Length: 582)
Name: NF5076-Insertion-3
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Original strand, 45269783 - 45270357
Alignment:
| Q |
8 |
cctttttcatgtgcacatctttgataagagtgccttagagataaattaccctttgacaagagttgaagataaaagggtcttcaactgtcaaggnnnnnnn |
107 |
Q |
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| T |
45269783 |
cctttttcatgtgcacatctttgataagagtgccttagagataaattaccctttgacaagagttgaagataaaagggtcttcaactgtcaaggaaaaaaa |
45269882 |
T |
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| Q |
108 |
ccttcaaataatgaagattgtagagcaagtcaaaagagaaaaactaactcctcctgtgaaattggaagcagtagctgtgttaatgttcggaaatttcaaa |
207 |
Q |
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| T |
45269883 |
ccttcaaataatgaagattgtagagcaagtcaaaagagaaaaactaactcctcctttgaaattggaagcagtagctgtgttaatgttcggaaatttcaaa |
45269982 |
T |
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| Q |
208 |
aggcagccgtacatcatattgacagaaagggtaaaggtatgagattttgtgtcttcattgtcttgtgaatgcttcgcataagttatttgttttgttctct |
307 |
Q |
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| T |
45269983 |
aggcagccgtacatcatattgacagaaagggtaaaggtatgagattttgtgtcttcattgtcttgtgaatgcttcgcataagttatttgttttgttctct |
45270082 |
T |
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| Q |
308 |
tcaattcatgttatcattttaaaatggcatgtacttcatgttaactctagtataaccatgtggaaaatgactgacattatttcaatccaaagatgatcta |
407 |
Q |
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| T |
45270083 |
tcaattcatgttatcatttttaaatggcatgtacttcatgttaactctagtataaccatgtggaaaatgactgacataatttgaatccaaagatgatcta |
45270182 |
T |
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| Q |
408 |
tgcactcaactttattattcaactcatttttaggcgaatgtatctacacataaacaatttcacgttcagctcaatgacgttgattgaaattgactttgtc |
507 |
Q |
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| T |
45270183 |
tgcactcaactttattattcaactcatttttaggcgaatgtatctacacataaacaatttcacgttcagctcaatgacgttgattgaaattgactttgtc |
45270282 |
T |
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| Q |
508 |
tcagaattggttgtaacttaagcaagtatttgtatcttttgaatccaagagtgtattttacgctcaaatttattg |
582 |
Q |
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| T |
45270283 |
tcagaattggttgtaacttaagcaagaatttgtatcttttgaatccaagagtgaattttacgctcaaatttattg |
45270357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 16889246 - 16889496
Alignment:
| Q |
11 |
ttttcatgtgcacatctttgataagagtgcct-tagagataaattaccctttgacaagagttgaaga---taaaagggtcttcaactgtcaaggnnnnnn |
106 |
Q |
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| T |
16889246 |
ttttcatgtgcacatctttgaaaagagtgccaatagagataaaataccctttccaaatagttgatgaagctagaagggtctacaactttcaaggaaataa |
16889345 |
T |
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| Q |
107 |
nccttcaaataatgaagattgtagagcaagtcaaaagagaaaaactaactcctcctgtgaaattggaagcagtagctgtgttaatgttcggaaatttcaa |
206 |
Q |
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| T |
16889346 |
acctcctaataatgaagattgtagagcaagtcaaaagagaaaagttaactcatcctttgaatttgggagtagtagttgttgtaaagttgggaaatcacaa |
16889445 |
T |
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| Q |
207 |
aaggcagccgtacatcatattgacagaaagggtaaaggtatgagattttgt |
257 |
Q |
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| T |
16889446 |
aaggtagctgtgcatcttattgacagaaaatgcaaaggtataagattttgt |
16889496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 17612687 - 17612736
Alignment:
| Q |
11 |
ttttcatgtgcacatctttgataagagtgccttagagataaattaccctt |
60 |
Q |
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| T |
17612687 |
ttttcatgtgcacatctttgataagagtgccttagagataaaataccctt |
17612736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 17612867 - 17612965
Alignment:
| Q |
164 |
tgaaattggaagcagtagctgtgttaatgttcggaaatttcaaaag---gcagccgtacatcatattgacagaaagggtaaaggtatgagattttgtgt |
259 |
Q |
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| T |
17612867 |
tgaaattggaagcaatagctgtgttaatgttgggaaattggaaaaggtagcagctttgaatcatattgacaaaaagtgtaaaggtacgagaatttgtgt |
17612965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 16873243 - 16873293
Alignment:
| Q |
11 |
ttttcatgtgcacatctttgataagagtgccttagagataaattacccttt |
61 |
Q |
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| T |
16873243 |
ttttcttgtgcacatctttgaaaagagtgcgttcgagataaattacccttt |
16873293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 16863262 - 16863306
Alignment:
| Q |
11 |
ttttcatgtgcacatctttgataagagtgccttagagataaatta |
55 |
Q |
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| T |
16863262 |
ttttcttgtgcgcatctttgaaaagagtgccttagagataaatta |
16863306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 17605794 - 17605842
Alignment:
| Q |
119 |
tgaagattgtagagcaagtcaaaagagaaaaactaactcctcctgtgaa |
167 |
Q |
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| T |
17605794 |
tgaaaattgtagagcagctcaaaagagaaaagctaactcctcctctgaa |
17605842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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