View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076-Insertion-6 (Length: 344)

Name: NF5076-Insertion-6
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076-Insertion-6
NF5076-Insertion-6
[»] chr1 (4 HSPs)
chr1 (8-344)||(44742523-44742859)
chr1 (146-199)||(4806792-4806845)
chr1 (127-168)||(41916587-41916628)
chr1 (145-173)||(41142709-41142737)
[»] chr7 (3 HSPs)
chr7 (144-193)||(35836028-35836077)
chr7 (130-195)||(5526720-5526785)
chr7 (145-173)||(3948064-3948092)
[»] chr4 (5 HSPs)
chr4 (127-169)||(29346335-29346377)
chr4 (130-195)||(16432958-16433023)
chr4 (145-173)||(24063231-24063259)
chr4 (145-173)||(24540853-24540881)
chr4 (145-173)||(49233818-49233846)
[»] chr3 (2 HSPs)
chr3 (130-203)||(38387967-38388040)
chr3 (145-173)||(31138427-31138455)
[»] chr5 (1 HSPs)
chr5 (133-185)||(20718966-20719018)
[»] scaffold0038 (1 HSPs)
scaffold0038 (136-173)||(31945-31982)
[»] chr8 (1 HSPs)
chr8 (128-173)||(26991780-26991825)
[»] chr6 (1 HSPs)
chr6 (136-173)||(28231448-28231485)
[»] chr2 (2 HSPs)
chr2 (145-193)||(25603914-25603962)
chr2 (145-197)||(45032703-45032755)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 44742859 - 44742523
Alignment:
Q  8 caattataccagtacttttttattttcattattaatgcaattatcgtgctcccattttaatagaaacaattttaattaattaaagaaacgtttttccatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44742859 caattataccagtacttttttattttcattattaatgcaattatcgtgctcccattttaatagaaacaattttaattaattaaagaaacgtttttccatt 44742760  T
Q  108 aacaattgagttcaaatgattatcctcatgagctcggctcagttgatagagacaatgcataatataaataagatttgaggctcaaacctcgatcactacc 207  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||||||||||| ||| ||||||||||||||||| ||||| |||    
T  44742759 aacaattgagttcaaatgattatcctcatgagttcggctgagttggtagagacaatacataatataaacaaggtttgaggctcaaacctcaatcaccacc 44742660  T
Q  208 nnnnnnnttgagtttacgtgattaataaactcgaccaaagtataaatcattcgaaacaactcgagtttaattcttagatgaaatatttttagtcaattat 307  Q
           ||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44742659 aaaaaaattgagttcaagtgattaataaactcgaccaaattatagatcattcgaaacaactcgagtttaattcttaaatgaaatatttttagtcaattat 44742560  T
Q  308 atttacttcagagtcgaactccaaattatcactctca 344  Q
    |||||||||| ||||||||||||||||||||||||||    
T  44742559 atttacttcacagtcgaactccaaattatcactctca 44742523  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 4806845 - 4806792
Alignment:
Q  146 tcagttgatagagacaatgcataatataaataagatttgaggctcaaacctcga 199  Q
    ||||||| ||||||||||| ||||||||  |||| ||||||| |||||||||||    
T  4806845 tcagttggtagagacaatgtataatatatgtaaggtttgaggttcaaacctcga 4806792  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 41916628 - 41916587
Alignment:
Q  127 ttatcctcatgagctcggctcagttgatagagacaatgcata 168  Q
    |||||||||||||||  ||||||||||||| |||||||||||    
T  41916628 ttatcctcatgagcttagctcagttgatagggacaatgcata 41916587  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 41142737 - 41142709
Alignment:
Q  145 ctcagttgatagagacaatgcataatata 173  Q
    |||||||||||||||||||||||||||||    
T  41142737 ctcagttgatagagacaatgcataatata 41142709  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 35836028 - 35836077
Alignment:
Q  144 gctcagttgatagagacaatgcataatataaataagatttgaggctcaaa 193  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  35836028 gctcagttgatagagacaatgcatagtatatataagatttgaggttcaaa 35836077  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 5526720 - 5526785
Alignment:
Q  130 tcctcatgagctcggctcagttgatagagacaatgcataatataaataagatttgaggctcaaacc 195  Q
    ||||| ||||||  ||||||||| ||  |||||||||||||||| |||||||||| || |||||||    
T  5526720 tcctcgtgagcttagctcagttggtatggacaatgcataatatatataagatttggggttcaaacc 5526785  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 3948064 - 3948092
Alignment:
Q  145 ctcagttgatagagacaatgcataatata 173  Q
    |||||||||||||||||||||||||||||    
T  3948064 ctcagttgatagagacaatgcataatata 3948092  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 29346377 - 29346335
Alignment:
Q  127 ttatcctcatgagctcggctcagttgatagagacaatgcataa 169  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  29346377 ttatcctcatgagcttagctcagttgatagagacaatgcataa 29346335  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 16433023 - 16432958
Alignment:
Q  130 tcctcatgagctcggctcagttgatagagacaatgcataatataaataagatttgaggctcaaacc 195  Q
    ||||| ||||||  |||||| ||| | ||||||||||||||||| ||||||| ||||| |||||||    
T  16433023 tcctcgtgagcttagctcagctgacatagacaatgcataatatatataagatctgaggttcaaacc 16432958  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 24063259 - 24063231
Alignment:
Q  145 ctcagttgatagagacaatgcataatata 173  Q
    |||||||||||||||||||||||||||||    
T  24063259 ctcagttgatagagacaatgcataatata 24063231  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 24540853 - 24540881
Alignment:
Q  145 ctcagttgatagagacaatgcataatata 173  Q
    |||||||||||||||||||||||||||||    
T  24540853 ctcagttgatagagacaatgcataatata 24540881  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 49233846 - 49233818
Alignment:
Q  145 ctcagttgatagagacaatgcataatata 173  Q
    |||||||||||||||||||||||||||||    
T  49233846 ctcagttgatagagacaatgcataatata 49233818  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 38387967 - 38388040
Alignment:
Q  130 tcctcatgagctcggctcagttgatagagacaatgcataatataaataagatttgaggctcaaacctcgatcac 203  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||||   ||||| ||||||||||| |||| ||||    
T  38387967 tcctcgtgagcttagctcagttgatagtgacaatgcataatatatgcaagatctgaggctcaaatctcggtcac 38388040  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 31138427 - 31138455
Alignment:
Q  145 ctcagttgatagagacaatgcataatata 173  Q
    |||||||||||||||||||||||||||||    
T  31138427 ctcagttgatagagacaatgcataatata 31138455  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 20719018 - 20718966
Alignment:
Q  133 tcatgagctcggctcagttgatagagacaatgcataatataaataagatttga 185  Q
    |||||||||  |||||||||||  ||||||||||||||||| |||||||||||    
T  20719018 tcatgagcttagctcagttgatttagacaatgcataatatacataagatttga 20718966  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 31982 - 31945
Alignment:
Q  136 tgagctcggctcagttgatagagacaatgcataatata 173  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  31982 tgagcttggctcagttgatagggacaatgcataatata 31945  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 26991825 - 26991780
Alignment:
Q  128 tatcctcatgagctcggctcagttgatagagacaatgcataatata 173  Q
    |||||||||||| | |||||||||||||  ||||||||||||||||    
T  26991825 tatcctcatgagtttggctcagttgatatggacaatgcataatata 26991780  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 28231485 - 28231448
Alignment:
Q  136 tgagctcggctcagttgatagagacaatgcataatata 173  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  28231485 tgagcttggctcagttgatagggacaatgcataatata 28231448  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 25603962 - 25603914
Alignment:
Q  145 ctcagttgatagagacaatgcataatataaataagatttgaggctcaaa 193  Q
    |||||||||||| |||||||||||||||| ||||| |||| || |||||    
T  25603962 ctcagttgatagggacaatgcataatatatataaggtttggggttcaaa 25603914  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 45032703 - 45032755
Alignment:
Q  145 ctcagttgatagagacaatgcataatataaataagatttgaggctcaaacctc 197  Q
    |||||||| ||| ||||||||||||||||   ||||| |||||||||||||||    
T  45032703 ctcagttggtagggacaatgcataatatatgcaagatctgaggctcaaacctc 45032755  T

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