View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076-Insertion-8 (Length: 280)
Name: NF5076-Insertion-8
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 52095538 - 52095266
Alignment:
| Q |
8 |
tggtgaaatctagaatcaagcctaacaagtattatccttagtcttggtggcactattaggctacatctgttctatgatagagtctagcaacatattgttt |
107 |
Q |
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| T |
52095538 |
tggtgaaatctagaatcaagcctaacaagtattatccttagtcttggtggcactattaggctacatctgttctatgatagagtctagcaacatattgttt |
52095439 |
T |
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| Q |
108 |
cttgatgtactgcagttttgttgatgtgtttactgatattggagacatggctttcgtttcactgtttccggataaactgtaatgatgatgctgtttcact |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52095438 |
cttgatgtactgcagttttattgatgtgtttactgatattggagacatggctttcgtttcactgtttccggataaactgtaatgatgatgctgtttcact |
52095339 |
T |
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| Q |
208 |
gccttcttgatttagttgatgcagttgtggaattttatctattatgctgtacgtattggttggtgtgctgcaa |
280 |
Q |
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| T |
52095338 |
gccttcttgatttagttgatgcagttgtggaattttatctattatgctgtacgtattggttggtgtgctgcaa |
52095266 |
T |
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Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 36411046 - 36410774
Alignment:
| Q |
8 |
tggtgaaatctagaatcaagcctaacaagtattatccttagtcttggtggcactattaggctacatctgttctatgatagagtctagcaacatattgttt |
107 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
36411046 |
tggtcaaatctggaatcaagcctaacaagtattttccttagtcttggtggcactattaggctacatctgttctatgatagagtctagaaacatattgctt |
36410947 |
T |
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| Q |
108 |
cttgatgtactgcagttttgttgatg---tgtttactgatattggagacatggctttcgtttcactgtttccggataaactgtaatgatgatgctgtttc |
204 |
Q |
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|||||| |||| |||| |||||||| ||||||||||||||| |||| ||||||||||||||||| |||| |||||| ||| |||||| ||||||||| |
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| T |
36410946 |
cttgatacactgaagttctgttgatgatgtgtttactgatattgaagacgtggctttcgtttcactgcttccagataaaatgtcatgatgttgctgtttc |
36410847 |
T |
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| Q |
205 |
actgccttcttgatttagttgatgcagttgtggaattttatctattatgctgtacgtattggttggtgtgctg |
277 |
Q |
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||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36410846 |
gctgccttctggatttagctgatgaagttgtggaattttatctattatgctgtatgtattggttggtgtgctg |
36410774 |
T |
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