View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_12 (Length: 436)
Name: NF5076_high_12
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 46439788 - 46440205
Alignment:
| Q |
1 |
attaagaggctaaactagtacttggaaagtcgaagttgtttaggcccatgtgaaaggccatccttatcaacgtgaaaacatatccaagtggccacgtcat |
100 |
Q |
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| T |
46439788 |
attaagaggctaaactagtacttggaaagtcgaagttgtttaggcccatgtgaaaggccatccttatcaacgtgaaaacatatccaagtggccacgtcat |
46439887 |
T |
|
| Q |
101 |
tagttccatccaactttgattgcaacggacggtagagatccatatagaccccaccaagttggtcgacctttaacgccaaatcttcgttaaataggagatg |
200 |
Q |
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| T |
46439888 |
tagttccatccaactttgattgcaacggacggtagagatccatatggaccccaccaagttggtcgacctttaacgccaaatcttcgttaaataggagatg |
46439987 |
T |
|
| Q |
201 |
aatgagtcgcagtagtatctcttacaccggaatctggtcattgggatcgcagatacaccgcatctgctaaaatacgcctgatccatttatgggccttctc |
300 |
Q |
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| T |
46439988 |
aatgagtcgcagtagtatctcttacaccggaatctggtcattgggatcgcagatacgccgcatctgctaaaatacgcctgatccatttatgggccttctc |
46440087 |
T |
|
| Q |
301 |
gaccagttgtgggacgacaccgtcgctggccctcggccggagaacggtctcggcaagcttcggaagcataacaccttcgccgcccgatctaactccggca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46440088 |
gaccagttgtgggacgacaccgtcgctggccctcggccggagaacggtctcagcaagcttcggaagcataacaccttcgccgcccgatctaactccggca |
46440187 |
T |
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| Q |
401 |
agggtacgccgctgtact |
418 |
Q |
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| T |
46440188 |
agggtacgccgctgtact |
46440205 |
T |
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