View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5076_high_15 (Length: 398)
Name: NF5076_high_15
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_15 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 37941684 - 37941287
Alignment:
| Q |
1 |
ttgatcattttaaacagcctctcaataatatatacaacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941684 |
ttgatcattttaaacagcctctcaataatatatacaacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagcc |
37941585 |
T |
|
| Q |
101 |
actgcaaaagtaccctcttggttattcttctgctcttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941584 |
actgcaaaagtaccctcttggttattcttcagctcttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatg |
37941485 |
T |
|
| Q |
201 |
ggtaatgtcttggaggaattaggaatattgaggcatgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaagaactcatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941484 |
ggtaatgtcttggaggaattaggaatattgaggcatgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaagaactcatc |
37941385 |
T |
|
| Q |
301 |
atgacaccattaacaacaatgattcatgtgatcatatggattaattaattgtttaatttcataagtgtattttgtaaagcaactgatgctagtataat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37941384 |
atgacaccattaacaacaatgattcatgtgatcatatggattaattaattgtttaatttcataagtgtaatttgtaaagcaactgatgctagtataat |
37941287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University