View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_16 (Length: 395)
Name: NF5076_high_16
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 31014963 - 31014688
Alignment:
| Q |
7 |
tcgaagaatattacctcatgtcgagcgaacatacagaaaacaaatgnnnnnnntaattaggccaactcccaaaatttgttttcttgaactagaaatttga |
106 |
Q |
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| T |
31014963 |
tcgaataatattacc--atgtcgagcgaacatacagaaaacaaatggaaaaaataattaggccaactcccaaaatttgttttcttgaactagaaatttga |
31014866 |
T |
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| Q |
107 |
ttttttgtgaaattgtcaagggtgttgttgtgacttgtaggtggagtatatatccataatacaagtcaaaacgtccacaacggaaaataggtgtagtaac |
206 |
Q |
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| T |
31014865 |
ttttttgtgaaattgtcaagggtgttgttgtgacttgtaggtggagtat----ccataatacaagtcaaaatgtccacaatggaaaataggtgtagtaac |
31014770 |
T |
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| Q |
207 |
ttgcgataaaagtttgcatgttctatatattttgtacttattatataataaaggaatgctactcttgcattcatattgtagg |
288 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31014769 |
ttgcgatagaagtttgcatgttctatatattttgtacttattatataataaaggaatgctactcttgcattcatatggtagg |
31014688 |
T |
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