View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_18 (Length: 385)
Name: NF5076_high_18
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 7699184 - 7699547
Alignment:
| Q |
1 |
acagagctggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7699184 |
acagagctggttaaagctaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacc |
7699283 |
T |
|
| Q |
101 |
tcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7699284 |
tcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaag |
7699383 |
T |
|
| Q |
201 |
agttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7699384 |
agttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagcgtaccggaaagacc |
7699483 |
T |
|
| Q |
301 |
ccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaag |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
7699484 |
ccagccacggctgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaag |
7699547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 7713529 - 7713896
Alignment:
| Q |
1 |
acagagctggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacc |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
7713529 |
acagagctggttaaagctaacattgaactgcgaaagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacc |
7713628 |
T |
|
| Q |
101 |
tcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaag |
200 |
Q |
| |
|
|| | ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||| |
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|
| T |
7713629 |
tcttggaggcgcttcaacttgcccagaaattcagggattggcccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaag |
7713728 |
T |
|
| Q |
201 |
agttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
7713729 |
agttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaagacc |
7713828 |
T |
|
| Q |
301 |
ccagccacggctgatggtgacgacggtgacacggccaggataaggtctgccgcaaccgacgaagttcc |
368 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
7713829 |
ccagccacggccgatggtgacgccggtgactcggccaggataaggtctgccgcaacctacgaagttcc |
7713896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 7731213 - 7731544
Alignment:
| Q |
8 |
tggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacctccttta |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||| | ||||| |||||||||||| | |||||||||| ||||||||||||||||| ||||| || |
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|
| T |
7731213 |
tggttaaagctgacattaaactgcgaaagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgta |
7731312 |
T |
|
| Q |
108 |
ggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaagagttagg |
207 |
Q |
| |
|
|| |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||| |
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|
| T |
7731313 |
agcccttcaactggcctagaaaagtggggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagg |
7731412 |
T |
|
| Q |
208 |
gattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagaccccagcca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
7731413 |
gattggcccagttactttcggcatttcggctaatgagaggaagttaagataagggaggtcgccaaactctactggaagcgtaccggaaagaccccagcca |
7731512 |
T |
|
| Q |
308 |
cggctgatggtgacgacggtgacacggccagg |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
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|
| T |
7731513 |
cggctgatggtgacgacggtgattcggccagg |
7731544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 7727053 - 7727384
Alignment:
| Q |
8 |
tggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacctccttta |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||| | ||||| ||||| |||||| | |||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
7727053 |
tggttaaagctgacattaaactgcgaaagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgta |
7727152 |
T |
|
| Q |
108 |
ggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaagagttagg |
207 |
Q |
| |
|
|| |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |
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|
| T |
7727153 |
agcccttcaactggcctagaaaagtggggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagg |
7727252 |
T |
|
| Q |
208 |
gattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagaccccagcca |
307 |
Q |
| |
|
|||||| || |||||||| |||||||| ||||||||||| | | ||||||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||| |
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|
| T |
7727253 |
gattggtccggttactttgggcatttcagccaatgagaggaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagcca |
7727352 |
T |
|
| Q |
308 |
cggctgatggtgacgacggtgacacggccagg |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
7727353 |
cggctgatggtgacgacggtgattcggccagg |
7727384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 7739371 - 7739702
Alignment:
| Q |
8 |
tggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacctccttta |
107 |
Q |
| |
|
|||||||| || || |||||||| |||||||| ||||| ||||| |||||||||||| | |||| |||||| |||||||||||||||| ||||| || |
|
|
| T |
7739371 |
tggttaaagctgacgttaaactgggaaagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgta |
7739470 |
T |
|
| Q |
108 |
ggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaagagttagg |
207 |
Q |
| |
|
|| |||||||| |||||| || | |||||| | ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739471 |
agcccttcaactggcctaggaaagtggggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttagg |
7739570 |
T |
|
| Q |
208 |
gattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagtgtaccggaaagaccccagcca |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | | ||||||| || |||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7739571 |
aattggcccagttactttgggcatttcggccaatgagaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagcca |
7739670 |
T |
|
| Q |
308 |
cggctgatggtgacgacggtgacacggccagg |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
7739671 |
cggctgatggtgacgacggtgattcggccagg |
7739702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 12908283 - 12908070
Alignment:
| Q |
8 |
tggttaaaactaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagcgccggataacttgttgttagacaaatcaacctccttta |
107 |
Q |
| |
|
|||||| | |||||||| ||||| || ||||| ||||| || |||| ||||| |||||| | |||||||||||||||||||||||||||||||| | || |
|
|
| T |
12908283 |
tggttagagctaacattcaactgggagagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttcta |
12908184 |
T |
|
| Q |
108 |
ggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctgaaagagttagg |
207 |
Q |
| |
|
|||||||||| |||||| |||| |||||| || ||||||||| ||||||| ||| | || || | | | ||| ||||||||||||||||||||| |
|
|
| T |
12908183 |
agcgcttcaaccggcctaggaaggtggggatcgggccactaaggttgttggagttaagtttgaggcttcgcaattttttgagtttgctgaaagagttagg |
12908084 |
T |
|
| Q |
208 |
gattggcccagtta |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12908083 |
gattggcccagtta |
12908070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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