View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_high_24 (Length: 368)

Name: NF5076_high_24
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_high_24
NF5076_high_24
[»] chr1 (4 HSPs)
chr1 (12-351)||(51536246-51536585)
chr1 (227-304)||(21692493-21692570)
chr1 (204-279)||(41071169-41071243)
chr1 (202-266)||(12558996-12559060)
[»] chr5 (2 HSPs)
chr5 (202-308)||(24172385-24172491)
chr5 (260-304)||(28419034-28419078)
[»] chr6 (3 HSPs)
chr6 (202-304)||(13341400-13341502)
chr6 (262-314)||(24797913-24797965)
chr6 (226-301)||(9546304-9546378)
[»] chr2 (2 HSPs)
chr2 (202-304)||(35990533-35990635)
chr2 (203-308)||(3335631-3335736)
[»] chr3 (4 HSPs)
chr3 (202-282)||(10449513-10449593)
chr3 (244-288)||(36273926-36273970)
chr3 (202-304)||(11286048-11286150)
chr3 (202-315)||(34579269-34579382)
[»] chr7 (2 HSPs)
chr7 (207-290)||(16866852-16866935)
chr7 (221-306)||(42907827-42907912)
[»] chr8 (3 HSPs)
chr8 (192-315)||(31804755-31804878)
chr8 (227-281)||(39591233-39591287)
chr8 (202-267)||(34036930-34036995)
[»] scaffold0294 (1 HSPs)
scaffold0294 (225-301)||(17409-17485)
[»] chr4 (1 HSPs)
chr4 (202-282)||(19682952-19683032)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 51536246 - 51536585
Alignment:
Q  12 gaatatccatgggtaccttaatactcgtagattacccgtatggcgatacatgcacagacacgggaatgagtatcgtatttatccagcaggacggggatga 111  Q
    ||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  51536246 gaatatctataggtaccttaatactcgtagattgtccgtatggcgatacatgcacagatacgggaatgagtatcgtatttatccaacaggacggggatga 51536345  T
Q  112 atatcatattagtcgtatccatggataccttcattgccattgacatctctatatgattttatttcaaatataaaccattgcctccataaagaaatataaa 211  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51536346 atatcatattagttgtatccatggatacctccattgccattgacatctctatatgattttatttcaaatataaaccattgcctccataaagaaatataaa 51536445  T
Q  212 caaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttcattctgaatgg 311  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |    
T  51536446 caaataaggtagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactaccttatttgtttatatttcattctaaattg 51536545  T
Q  312 agtagtattgttcaaatctttagttctccatgcatgtttt 351  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51536546 agtagtattgttcaaatctttagttctccatgcatgtttt 51536585  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 21692493 - 21692570
Alignment:
Q  227 aaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttcattc 304  Q
    |||||||||||||  |  ||||||||| |||||||||||||| || ||||||||||  | |||| |||||||||||||    
T  21692493 aaaagttgatgtatgtatactaaatttttaaccacatacattgacctttcaactaccatttttgcttatatttcattc 21692570  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 41071169 - 41071243
Alignment:
Q  204 aatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaac 279  Q
    |||||||||||| | |||||||||||||||||| ||  | |||||||||| || ||||||||||| || |||||||    
T  41071169 aatataaacaaaaatgatagttaaaaagttgatctatgtggactaaattt-tagccacatacattgacctttcaac 41071243  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 12559060 - 12558996
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacataca 266  Q
    ||||||||| |||| ||| ||||| |||||||||||||  | |||||||||| ||| ||||||||    
T  12559060 gaaatataagcaaaaaaggtagttgaaaagttgatgtatatggactaaatttttaatcacataca 12558996  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 24172385 - 24172491
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttca 301  Q
    |||||||||||||| ||||| ||| || ||||||| ||  | ||| |||||  |||||||||||||| || ||||||||| ||| |||||||||||||||    
T  24172385 gaaatataaacaaaaaagattgttgaatagttgatatatatggacaaaattcttaaccacatacattgacttttcaactattttttttgtttatatttca 24172484  T
Q  302 ttctgaa 308  Q
    || ||||    
T  24172485 ttttgaa 24172491  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 28419034 - 28419078
Alignment:
Q  260 acatacattaacatttcaactactttatttgtttatatttcattc 304  Q
    ||||||||  || ||||||||||||| ||||||||||||||||||    
T  28419034 acatacatcgacttttcaactactttttttgtttatatttcattc 28419078  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 13341502 - 13341400
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttca 301  Q
    ||||||||| |||| | ||||||| ||||  ||||||| |  |||| ||||| ||||||||||||||||| ||||||||||  | ||||||||| |||||    
T  13341502 gaaatataagcaaaaatgatagttgaaaaaatgatgtattcggacttaatttttaaccacatacattaacctttcaactaccatttttgtttatctttca 13341403  T
Q  302 ttc 304  Q
    |||    
T  13341402 ttc 13341400  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 24797913 - 24797965
Alignment:
Q  262 atacattaacatttcaactactttatttgtttatatttcattctgaatggagt 314  Q
    |||||||||| ||||||||||| ||||||||||||||| |||| |||||||||    
T  24797913 atacattaacttttcaactactctatttgtttatatttaattcggaatggagt 24797965  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 9546378 - 9546304
Alignment:
Q  226 aaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttca 301  Q
    |||||||| ||||| || |||||||||| |||| ||||||||| || ||||||||||| | |||||||||||||||    
T  9546378 aaaaagtt-atgtatttggactaaatttttaactacatacattgacgtttcaactactatttttgtttatatttca 9546304  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 35990533 - 35990635
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttca 301  Q
    |||||||||  ||| ||| ||||| |||||||||||||  | |||||||||| |||||||||||||| || ||||||||||    |||| ||||||||||    
T  35990533 gaaatataagtaaagaaggtagttgaaaagttgatgtatgtagactaaatttttaaccacatacattgacttttcaactaccgcttttgcttatatttca 35990632  T
Q  302 ttc 304  Q
    |||    
T  35990633 ttc 35990635  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 308
Target Start/End: Original strand, 3335631 - 3335736
Alignment:
Q  203 aaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttcat 302  Q
    ||||||||||||||||| ||||| ||||||||||| |  | |||||||||| ||||||||    ||  | ||||||||||| |||||| |||||||||||    
T  3335631 aaatataaacaaataaggtagttgaaaagttgatgcatatagactaaatttttaaccacaactgtttgcttttcaactactctatttgattatatttcat 3335730  T
Q  303 tctgaa 308  Q
    | ||||    
T  3335731 tatgaa 3335736  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 10449513 - 10449593
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactac 282  Q
    ||||||||| |||| | ||||||| |||||||||||||  | |||||||||  |||||||||||||| || ||||||||||    
T  10449513 gaaatataagcaaaaaggatagttcaaaagttgatgtatatggactaaattcttaaccacatacattgacttttcaactac 10449593  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 36273926 - 36273970
Alignment:
Q  244 gactaaatttgtaaccacatacattaacatttcaactactttatt 288  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  36273926 gactaaatttttaaccatatacattaacatttcaactactttatt 36273970  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 11286048 - 11286150
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttca 301  Q
    |||||||||||||| | | ||||| |||||||||||||  | |||||||||| ||||||| ||||   || ||||||||||  | |||| ||||||||||    
T  11286048 gaaatataaacaaaaagggtagttgaaaagttgatgtatgtggactaaatttttaaccacgtacacggacttttcaactaccatttttgcttatatttca 11286147  T
Q  302 ttc 304  Q
    |||    
T  11286148 ttc 11286150  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 34579269 - 34579382
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttca 301  Q
    |||||||||||||| | ||||| | ||||||||| |||  | |||||||||| ||||||| ||| || |  |||||||||||   ||| |||||||||||    
T  34579269 gaaatataaacaaaaatgataggtgaaaagttgacgtacgtggactaaatttttaaccacgtacgttgatttttcaactactacctttctttatatttca 34579368  T
Q  302 ttctgaatggagta 315  Q
    || ||||| |||||    
T  34579369 ttttgaattgagta 34579382  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 16866852 - 16866935
Alignment:
Q  207 ataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttg 290  Q
    ||||||||||| | ||||| |||||||||||||  | |||||||||| |||| ||||||||| |  ||||||||| ||||||||    
T  16866852 ataaacaaatatggtagttgaaaagttgatgtacgtggactaaatttttaactacatacattgatctttcaactaatttatttg 16866935  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 42907912 - 42907827
Alignment:
Q  221 tagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttcattctg 306  Q
    ||||| |||||||||||||  | ||||||||||  |||||||||||| |||  |||||||||  | |||| |||||||| ||||||    
T  42907912 tagttgaaaagttgatgtatatggactaaatttcaaaccacatacatcaactattcaactaccctttttgcttatattttattctg 42907827  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 31804878 - 31804755
Alignment:
Q  192 cctccataaagaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgt 291  Q
    |||||| || |||||||||||||| | | ||||| ||||||||| |||  |  ||||||||  ||||||||| |||| || |||||| |||   |||||     
T  31804878 cctccaaaatgaaatataaacaaaaatggtagttgaaaagttgaggtatatgtactaaattcttaaccacatgcattgacttttcaattaccacatttgc 31804779  T
Q  292 ttatatttcattctgaatggagta 315  Q
    ||||||||||||||| | ||||||    
T  31804778 ttatatttcattctggagggagta 31804755  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 39591233 - 39591287
Alignment:
Q  227 aaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaacta 281  Q
    |||||||||||||  | |||||||||| |||||||||||||| || |||||||||    
T  39591233 aaaagttgatgtatctggactaaatttttaaccacatacattgacctttcaacta 39591287  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 34036930 - 34036995
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacat 267  Q
    ||||||||||||||||||||| || ||||||||| ||| ||  | ||||||| |||||| ||||||    
T  34036930 gaaatataaacaaataagatatttgaaaagttgaagtatttgaattaaatttttaaccatatacat 34036995  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 17485 - 17409
Alignment:
Q  225 taaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactactttatttgtttatatttca 301  Q
    |||||| ||||||||  | || ||||||| |||| || |||||| ||||||||||||||   |||||||||||||||    
T  17485 taaaaaattgatgtacgtggattaaatttttaactacgtacattgacatttcaactactaattttgtttatatttca 17409  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 19683032 - 19682952
Alignment:
Q  202 gaaatataaacaaataagatagttaaaaagttgatgtaatttgactaaatttgtaaccacatacattaacatttcaactac 282  Q
    ||||||||| ||||  |||||||| |||||||||||||  | || ||||||| | || || |||||| |||||||||||||    
T  19683032 gaaatataagcaaaagagatagtttaaaagttgatgtatgtggattaaattttttacaacgtacattgacatttcaactac 19682952  T

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