View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_27 (Length: 343)
Name: NF5076_high_27
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 30838640 - 30838958
Alignment:
| Q |
18 |
cattattttaaattgtctaagacaaaaatattcagggtcgactctaatgctaaatatgattataataaaaacaaagttatttaattatttcttttttatt |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30838640 |
cattattttaaattgtctaagacaaaaaaattcagggtcgactctaatgctaaatatgattataataaaaacaaagttatttaattatttcttttttatt |
30838739 |
T |
|
| Q |
118 |
aacaaaattgaaaa--aatgcaatagtgtcacacatgataattttattttagcctcttatcaaatttcgtgtagttaaagaatgtgtgtgattgaatcaa |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30838740 |
aacaaaattgaaaaaaaatgcaatagtgtcacacatgataattttattttagcctcttatcaaattttgtgtagttaaagaatgtgtgtgattgaatcaa |
30838839 |
T |
|
| Q |
216 |
acaataaattaattcaagtaataaagaatttgaatcttgtaagtaagtagtcataagttcgaagatagaaatctcatcctaataaaaaagaagaagaaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30838840 |
acaataaattaattcaagtaataaagaatttgaatcttgtaagtaagtagtcataagttcgaagatagaaacctcatcctaataaaaaagaagaagaaaa |
30838939 |
T |
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| Q |
316 |
atatgtgtgagagtataat |
334 |
Q |
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||||||||||||||||||| |
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| T |
30838940 |
atatgtgtgagagtataat |
30838958 |
T |
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