View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_33 (Length: 299)
Name: NF5076_high_33
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 45734599 - 45734441
Alignment:
| Q |
84 |
caagatttataggggtacctatctgttggcgcttttgtgaaagcgttattatatgtttgtatccaaataaaaataaaaacactgtgcaatatagttttcc |
183 |
Q |
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| T |
45734599 |
caagatttataggggtacctatctgttggcgcttttgtgaaagcgttattatatgtttgtatccaaataaaaataaaaacactgtgcaatatagttttcc |
45734500 |
T |
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| Q |
184 |
attttcatgctgtaattctttctcacactctcaacacttgttcaaaccttcttcttctc |
242 |
Q |
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| T |
45734499 |
attttcatgttgtaattctttctcacactctcaacacttgttcaaaccttcttcttctc |
45734441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 45734419 - 45734347
Alignment:
| Q |
227 |
aaaccttcttcttctctgttctcttccaacccacttgaacctaacccttctatgttctcttctccatccacca |
299 |
Q |
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| T |
45734419 |
aaaccttcttcttctcagttctcttccaactcacttgaacctaacccttctatgttctcttctccatccacca |
45734347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45734682 - 45734628
Alignment:
| Q |
1 |
tatttaaacattgatgtttgctctagtctctcgttttcaaaactcaactttgcat |
55 |
Q |
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| T |
45734682 |
tatttaaacattgatgtttgctttagtctctcgttttcaaaactcaactttgcat |
45734628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 45727999 - 45727876
Alignment:
| Q |
169 |
gcaatatagttttccattttcatgctgtaattctttctcacactctcaacacttgttcaaac---cttcttcttctctgttctcttccaacccacttgaa |
265 |
Q |
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| T |
45727999 |
gcaatatatttttctatttccgtgttttaattgtttctcgcactctcgatactcgctcaaactaccttcttcttcatagttctcttccaactcacttgag |
45727900 |
T |
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| Q |
266 |
cctaacccttctatgttctcttct |
289 |
Q |
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| T |
45727899 |
cctaacccttctacgttctcttct |
45727876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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