View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_35 (Length: 266)
Name: NF5076_high_35
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 3172068 - 3171814
Alignment:
| Q |
1 |
ttccaaaacttgacaaaacattgagtttaactcattctagtagtgtgaaggcactggaagcaactttaaacatggtagattcaaattcttcgattgaagt |
100 |
Q |
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| T |
3172068 |
ttccaaaacttgacaaaacattgagtttaactcattctagtagtgtgaaggcactggaagcaactttaaacatggtagattcaaattcttcgattgaagt |
3171969 |
T |
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| Q |
101 |
ccttcctctttcgttgataaaagagttgaaacttgtggatgttgatctcgatgtgaaaaaattcccaaagaattggatgcaaaatctgacttctctgaag |
200 |
Q |
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| T |
3171968 |
ccttcctctttcattgataaaagagttgaaacttgtggatgttgatctcgatgtgaaaaaattcccaaagaattggatgcaaaatctgacttctctgaag |
3171869 |
T |
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| Q |
201 |
catctagtttttggtcggcttccaagtcaaacatttcaggaaatccaaatttcat |
255 |
Q |
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| T |
3171868 |
catctagtttttggtcatcttccaagtcaaacatttcaggaaatccaaatttcat |
3171814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 3004340 - 3004383
Alignment:
| Q |
153 |
gtgaaaaaattcccaaagaattggatgcaaaatctgacttctct |
196 |
Q |
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| T |
3004340 |
gtgaaaaaactcccaaagaattggttgcaaaatctcacttctct |
3004383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 3140285 - 3140231
Alignment:
| Q |
151 |
atgtgaaaaaattcccaaagaattggatgcaaaatctgacttctctgaagcatct |
205 |
Q |
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| T |
3140285 |
atgtgaaaaaactcccagaggattggttgcaaattctgacttctctcaagcatct |
3140231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 7161476 - 7161570
Alignment:
| Q |
150 |
gatgtgaaaaaattcccaaagaattggatgcaaaatctgacttctctgaagcatctagtttttggtcggcttccaagtcaaacatttcaggaaat |
244 |
Q |
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| T |
7161476 |
gatgtaaaaaaatacctgaaggattgggtgcaaaatctgacttccctcgagcatcttgtttttatgaagcttccaagtcgaacatttcaggaaat |
7161570 |
T |
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