View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_38 (Length: 264)
Name: NF5076_high_38
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 40986667 - 40986897
Alignment:
| Q |
16 |
atgaataaaagtgtacctggagtagatagctgcaaactgttagaatcttagcatctttgaaatcaatcagtatttgacatagtccattggcatgaagttt |
115 |
Q |
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| T |
40986667 |
atgaataaaattgtacctggagtagatagctgcaaactgttagaatcttagcatctttgaaatcaatcagtatttgacatagtccattggcatgaagttt |
40986766 |
T |
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| Q |
116 |
atagaattttggttctgtggaaaaaccaatgtctacctcttctataacatttggacttacacatatctctgaagtaaacacatccccagaatacttgaag |
215 |
Q |
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| T |
40986767 |
ataaaattttggttctgtggaaaaaccaatgtctacctattctataacatttggacttacacatatctctgaagtaaacacatccccagaatacttgaag |
40986866 |
T |
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| Q |
216 |
aatttaagatttggtgcatctaatttgatac |
246 |
Q |
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| T |
40986867 |
aatttaagatttggtgcatctaatttgatac |
40986897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 40994651 - 40994702
Alignment:
| Q |
183 |
tctgaagtaaacacatccccagaatacttgaagaatttaagatttggtgcat |
234 |
Q |
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| T |
40994651 |
tctgaagtaaacacagccccagaatatttgaagtatttaagatttggtgcat |
40994702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 40994498 - 40994544
Alignment:
| Q |
21 |
taaaagtgtacctggagtagatagctgcaaactgttagaatcttagc |
67 |
Q |
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| T |
40994498 |
taaaagagtacctggagtagataactgcaaactgttagaatcttagc |
40994544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 21180153 - 21180102
Alignment:
| Q |
183 |
tctgaagtaaacacatccccagaatacttgaagaatttaagatttggtgcat |
234 |
Q |
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||||||||||||||| | |||||||| |||||| |||| ||||||||||||| |
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| T |
21180153 |
tctgaagtaaacacaactccagaatatttgaagtatttcagatttggtgcat |
21180102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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