View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_high_4 (Length: 504)

Name: NF5076_high_4
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_high_4
NF5076_high_4
[»] chr2 (3 HSPs)
chr2 (180-466)||(5694612-5694901)
chr2 (219-427)||(28563766-28563976)
chr2 (175-245)||(43516392-43516462)
[»] chr1 (11 HSPs)
chr1 (177-467)||(43883574-43883868)
chr1 (288-465)||(33753744-33753921)
chr1 (262-437)||(33755116-33755291)
chr1 (178-245)||(11431324-11431391)
chr1 (178-245)||(32847811-32847878)
chr1 (181-245)||(32849924-32849988)
chr1 (179-245)||(35383051-35383117)
chr1 (180-245)||(12097935-12098000)
chr1 (178-239)||(31809986-31810047)
chr1 (181-245)||(42301615-42301679)
chr1 (171-239)||(52793694-52793762)
[»] chr8 (3 HSPs)
chr8 (180-467)||(7272899-7273187)
chr8 (177-245)||(359309-359377)
chr8 (175-245)||(21142473-21142543)
[»] chr3 (10 HSPs)
chr3 (180-460)||(5387032-5387315)
chr3 (183-467)||(55198089-55198374)
chr3 (181-385)||(5377807-5378013)
chr3 (357-467)||(1678545-1678655)
chr3 (226-364)||(1679820-1679962)
chr3 (177-245)||(3025819-3025887)
chr3 (179-245)||(3026876-3026942)
chr3 (344-437)||(20340151-20340244)
chr3 (179-245)||(25529912-25529978)
chr3 (180-245)||(39870453-39870518)
[»] chr4 (5 HSPs)
chr4 (178-474)||(28426831-28427129)
chr4 (180-468)||(2672734-2673023)
chr4 (179-415)||(20947420-20947653)
chr4 (217-348)||(28430574-28430706)
chr4 (381-437)||(11148542-11148598)
[»] chr7 (7 HSPs)
chr7 (183-474)||(43901867-43902160)
chr7 (296-465)||(27161768-27161937)
chr7 (219-465)||(27160343-27160592)
chr7 (174-245)||(32429865-32429936)
chr7 (177-245)||(37556527-37556595)
chr7 (180-245)||(37547933-37547998)
chr7 (381-437)||(38758128-38758184)
[»] chr5 (4 HSPs)
chr5 (311-465)||(35931120-35931274)
chr5 (219-465)||(35929560-35929813)
chr5 (179-238)||(33489901-33489960)
chr5 (180-245)||(9672346-9672411)
[»] chr6 (2 HSPs)
chr6 (21-103)||(15306270-15306352)
chr6 (180-239)||(19402123-19402182)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 180 - 466
Target Start/End: Original strand, 5694612 - 5694901
Alignment:
Q  180 aggcttaaataagtaaaatgttca-tctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaaca 276  Q
    |||||||||||||||||| | ||  | ||| ||||| ||||||||||||||||||||||||  |||||||||||  || ||||| |||||||| ||||||    
T  5694612 aggcttaaataagtaaaaaggtctctgtaaattggcgcattttttgttttagtccctgtaaatttttttgttgcgagacaaaccctgtatttaccaaaca 5694711  T
Q  277 ttttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgact 376  Q
    ||||| ||||||||| || |||||||||  ||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  5694712 ttttgtatctagtccatgccgtccaattacgtgaaaaaaacaatgagctggctaacggagcaatacgtggcacttcgtgagttggcactagttgatgact 5694811  T
Q  377 cgggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaaattttaaaaa 466  Q
     ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||  ||||  ||||| |||||||||||||||    
T  5694812 ggggttagtatagggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacataatcatcaatttttaaattttaaaaa 5694901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 219 - 427
Target Start/End: Complemental strand, 28563976 - 28563766
Alignment:
Q  219 tttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaacattttgaatctagtccctgtcgtccaattttgtggaaaaaa 316  Q
    |||| ||||| ||||||||||  ||||||||| || ||||| || |||||||| ||||| ||||||   | ||||||| | |||||||   ||  |||||    
T  28563976 ttttggttttcgtccctgtaagattttttgttacaagataacccctgtatttaccaaacgttttgacattcgtccctgccatccaattccatgagaaaaa 28563877  T
Q  317 cgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcgggttagtataggaactaaaaccaaaaacacaatttaac 416  Q
    || ||||||||||||||||   ||| ||||||||| |||| |||||| || ||||||||| ||||||||||||||| ||||||||||||  || ||| ||    
T  28563876 cgctgagctggctaacggaggcttatgtggcactttgtgacttggcattaattgatgactggggttagtataggaattaaaaccaaaaatgcatttttac 28563777  T
Q  417 atagggactaa 427  Q
    |||||||||||    
T  28563776 atagggactaa 28563766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 43516392 - 43516462
Alignment:
Q  175 aataaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||||||| |||||| || | | ||| || || ||||||||||||| |||||||||| |||||    
T  43516392 aataaaggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgttttcgtccctgtaagttttt 43516462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 177 - 467
Target Start/End: Complemental strand, 43883868 - 43883574
Alignment:
Q  177 taaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaa 274  Q
    ||||||||||||||||||||| || ||| ||||||||  ||||||||||||||||||||||||  |||||||||||  || ||||| ||||||||  |||    
T  43883868 taaaggcttaaataagtaaaaggtccatgtaagttggtgcattttttgttttagtccctgtaaatttttttgttgcgagacaaaccctgtatttactaaa 43883769  T
Q  275 cattttgaatctagtccctgtcgtccaattttgtggaaaaaa--cgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgat 372  Q
    | ||||| ||||||||| || ||||||||| |||| ||||||  |||||| |||||||||||| || |||||||||||||||||||||||||||||||||    
T  43883768 cgttttggatctagtccatgccgtccaattctgtgaaaaaaaaacgatgacctggctaacggagcaatacgtggcacttcgtgagttggcactagttgat 43883669  T
Q  373 gactcgggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaaattttaaaaac 467  Q
    ||||  |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||| |||| |||||  ||||| ||||||||| ||||||    
T  43883668 gactgaggttagtacagggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacgtaatcatcaatttttaaatttaaaaaac 43883574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 465
Target Start/End: Original strand, 33753744 - 33753921
Alignment:
Q  288 gtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcgggttagtat 387  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||| ||   ||| |||||||||| ||| |||||| |||||||||| | | |||| |||    
T  33753744 gtccctgccgtccaatttcgtgaaaaaaacgttgagctggctaacagaggcttatgtggcacttcatgacttggcattagttgatgagt-gagttaatat 33753842  T
Q  388 aggaactaaaaccaaaaacacaatttaacatagggactaatttaag-aaaatgtaattttcaatgtttaaattttaaaa 465  Q
    ||| ||||||||||||||| || ||| ||||||||||||| ||||| |||| ||||| |||||| ||| ||||||||||    
T  33753843 agggactaaaaccaaaaacgcatttttacatagggactaaattaagaaaaacgtaatcttcaatttttgaattttaaaa 33753921  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 437
Target Start/End: Complemental strand, 33755291 - 33755116
Alignment:
Q  262 tgtatttatcaaacattttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttgg 361  Q
    |||||||| ||||| ||||||   | ||||||| |||||||||  ||| |||||||||||||||||||||||||   ||| ||| ||||| |||| ||||    
T  33755291 tgtatttaccaaacgttttgatattcgtccctgccgtccaattccgtgaaaaaaacgatgagctggctaacggaggcttatgtgacactttgtgacttgg 33755192  T
Q  362 cactagttgatgactcgggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaa 437  Q
    || || ||||||| |  |||||||||||| | |||||  |||||| || ||| ||||||||||||| |||| ||||    
T  33755191 cattaattgatgattgtggttagtatagggattaaaattaaaaacgcatttttacatagggactaaattaaaaaaa 33755116  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 11431391 - 11431324
Alignment:
Q  178 aaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||||||||||| || | | ||||||||| | ||||| |||||||||||||||| |||||    
T  11431391 aaaggcttaaataagtaaaaggtccctgtaagttggcgcgtttttcgttttagtccctgtaagttttt 11431324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 32847811 - 32847878
Alignment:
Q  178 aaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||||||||||| || | | ||||||||| | ||||| |||||||||||||||| |||||    
T  32847811 aaaggcttaaataagtaaaaggtccctgtaagttggcgcgtttttggttttagtccctgtaagttttt 32847878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 32849988 - 32849924
Alignment:
Q  181 ggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    ||||||||||||||||| || | | ||| ||||| | ||||||||||||||||||| ||||||||    
T  32849988 ggcttaaataagtaaaaggtccctgtaaattggcgcgttttttgttttagtccctgcaatttttt 32849924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 35383117 - 35383051
Alignment:
Q  179 aaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    ||||||||||||||||||| || |   ||||||||| | ||||| |||||||||||||||| |||||    
T  35383117 aaggcttaaataagtaaaaggtcccgataagttggcgcgtttttggttttagtccctgtaagttttt 35383051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 12098000 - 12097935
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||||||||| || |   |||||| || ||||||| ||||||||||||||| ||||||    
T  12098000 aggcttaaataagtaaaaggtccccgtaagttcgcgcatttttggttttagtccctgtattttttt 12097935  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 31809986 - 31810047
Alignment:
Q  178 aaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa 239  Q
    ||||||||||||| |||||| || | | |||||| || ||||||||||||| ||||||||||    
T  31809986 aaaggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgtaa 31810047  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 42301679 - 42301615
Alignment:
Q  181 ggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||| |||||| |||| |||||||| ||  |||||||||||| |||| ||||| |||||    
T  42301679 ggcttaaatatgtaaaaggttcctctaagttcgcgtattttttgttttcgtccttgtaagttttt 42301615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 52793694 - 52793762
Alignment:
Q  171 atataataaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa 239  Q
    |||||| ||||||||||||| || ||| || | | |||||| || ||||||||||||| ||||||||||    
T  52793694 atataaaaaaggcttaaatatgttaaaggtccctgtaagttcgctcattttttgttttcgtccctgtaa 52793762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 180 - 467
Target Start/End: Original strand, 7272899 - 7273187
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaacat 277  Q
    |||||||||||||||||| ||   | ||||||||| ||||||| ||||||||||||||||  |||||||||||  || ||||| |||||||| ||||| |    
T  7272899 aggcttaaataagtaaaaggtctctgtaagttggcgcatttttggttttagtccctgtaagtttttttgttgcgagacaaaccctgtatttaccaaacgt 7272998  T
Q  278 tttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactc 377  Q
    |||| |||||||||||| |||||||||  ||| |||||| ||||| || ||||||||| || |||||||||||||||||||||||||||||||||||||     
T  7272999 tttggatctagtccctgccgtccaattccgtg-aaaaaatgatgaccttgctaacggagcaatacgtggcacttcgtgagttggcactagttgatgactg 7273097  T
Q  378 gggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaaattttaaaaac 467  Q
    |||||| |||||| ||||||||||||||  ||||||||||||||||||||||||| |||| |||||  ||||| ||||||||||||||||    
T  7273098 gggttaatatagggactaaaaccaaaaatgcaatttaacatagggactaatttaaaaaaacgtaatcatcaatttttaaattttaaaaac 7273187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 359377 - 359309
Alignment:
Q  177 taaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||||| |||||| || | | |||||| || ||||||||||||| ||||||| ||||||||    
T  359377 taaaggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgcaatttttt 359309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 21142473 - 21142543
Alignment:
Q  175 aataaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||| ||||||||| |||||| || | | |||||| || ||||||||||||| |||| |||||||||||    
T  21142473 aataaaagcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccttgtaatttttt 21142543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 180 - 460
Target Start/End: Complemental strand, 5387315 - 5387032
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccg---tgtatttatcaaa 274  Q
    |||||||||||||| ||| || | | ||| ||||  ||||||| ||||||||||||||||  |||||||||||  || ||||||   |||||||  ||||    
T  5387315 aggcttaaataagtgaaaggtccctgtaaattggtgcatttttggttttagtccctgtaagtttttttgttgcgagacaaaccggcctgtattt--caaa 5387218  T
Q  275 cattttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatga 374  Q
    ||||||| |||||||||||| |||||||||  ||  |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5387217 cattttggatctagtccctgccgtccaattccgtaaaaaaaaagatgagttggctaacggagcattacgtggcacttcgtgagttggcactagttgatga 5387118  T
Q  375 ctcgggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaaattt 460  Q
    || ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  5387117 ctggggttagtatagggactaaaaccaaaaatgcaatttaacatagggactaatttaagaaaacgtaattttcaatgtttgaattt 5387032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 183 - 467
Target Start/End: Complemental strand, 55198374 - 55198089
Alignment:
Q  183 cttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa-ttttttgttgcatgataaaccgtgtatttatcaaacattttg 281  Q
    ||||||||||||||| || | | ||| ||||| |||||||||||||| | ||||||| |||||||||||  || ||||| |||||||||||||| |||||    
T  55198374 cttaaataagtaaaaggtccttgtaaattggcgcattttttgttttaattcctgtaagttttttgttgcgagacaaaccctgtatttatcaaacgttttg 55198275  T
Q  282 aatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcgggt 381  Q
     |||||||||||| | ||||||| |||| |||||||||||| ||||||||| || || || |||||||||||||||||| ||||||||||||||| ||||    
T  55198274 gatctagtccctgccatccaattctgtgaaaaaaacgatgaactggctaacagagcaatatgtggcacttcgtgagttgacactagttgatgactggggt 55198175  T
Q  382 tagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaaattttaaaaac 467  Q
    | ||||| | ||||||||||||||| ||||||||||||||||||||||||| |||| |||||  ||||| ||| ||||||||||||    
T  55198174 tggtataaggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacgtaatcatcaattttttaattttaaaaac 55198089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 181 - 385
Target Start/End: Original strand, 5377807 - 5378013
Alignment:
Q  181 ggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt--gttgcatgataaaccgtgtatttatcaaacatt 278  Q
    ||||||||||||||||| || | | ||| ||||| |||||||||||||||||||||||| |||||  |||||  || ||||| |||||||| ||||| ||    
T  5377807 ggcttaaataagtaaaaggtccctgtaaattggcgcattttttgttttagtccctgtaagttttttggttgcgagacaaaccctgtatttaccaaacgtt 5377906  T
Q  279 ttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcg 378  Q
    ||| || ||||||||| ||| |||||  ||| ||||||||||||||||||||||  |||| || |||||||||| |||||||| ||||||||||||||      
T  5377907 ttggatatagtccctgccgttcaattccgtgaaaaaaacgatgagctggctaacataacaatatgtggcacttcatgagttggaactagttgatgactga 5378006  T
Q  379 ggttagt 385  Q
    |||||||    
T  5378007 ggttagt 5378013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 357 - 467
Target Start/End: Complemental strand, 1678655 - 1678545
Alignment:
Q  357 gttggcactagttgatgactcgggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaa 456  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||| |||| |||||  ||||| |||||    
T  1678655 gttggcactagttgatgactggggttagtatagggactaaaaccaaaaaagcaaattaacatagggactaatttaaaaaaacgtaatcatcaatttttaa 1678556  T
Q  457 attttaaaaac 467  Q
    |||||||||||    
T  1678555 attttaaaaac 1678545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 364
Target Start/End: Complemental strand, 1679962 - 1679820
Alignment:
Q  226 tttagtccctgtaatttttt-gttgcatgataaaccgtgtatttatcaaacattttgaatctagtccctgtcgtccaattttgtg---gaaaaaacgatg 321  Q
    |||||||| ||||||||||| |||||  || ||||| |||||||| | ||||||||| ||||| ||| || |||||||||  |||    |||||||||||    
T  1679962 tttagtccttgtaatttttttgttgcgagacaaaccctgtatttaccgaacattttggatctaatccttgccgtccaattccgtgaaaaaaaaaacgatg 1679863  T
Q  322 agctggctaacggaacattacgtggcacttcgtgagttggcac 364  Q
    ||||||||||| || || || ||||||||||||||||||||||    
T  1679862 agctggctaacagagcaatatgtggcacttcgtgagttggcac 1679820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 3025819 - 3025887
Alignment:
Q  177 taaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    ||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||| ||||| |||||    
T  3025819 taaaggcttaaataagtaaaaggttcctgtaagttggcgcattttttgttttagtccatgtaagttttt 3025887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 3026942 - 3026876
Alignment:
Q  179 aaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    ||||||||||||||||||| || | | ||||||||||| ||||| |||||||||||||||| |||||    
T  3026942 aaggcttaaataagtaaaaggtccctgtaagttggcacgtttttggttttagtccctgtaagttttt 3026876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 437
Target Start/End: Complemental strand, 20340244 - 20340151
Alignment:
Q  344 tggcacttcgtgagttggcactagttgatgactcgggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaa 437  Q
    |||||||| ||||  || || |||||||||||| | ||||||||||| || |||||||||||| || ||| ||||||||||||| |||| ||||    
T  20340244 tggcacttggtgatatgtcattagttgatgactggtgttagtatagggaccaaaaccaaaaacgcatttttacatagggactaaattaaaaaaa 20340151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 25529978 - 25529912
Alignment:
Q  179 aaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    ||||||||||||||||||| || | | ||||||||| | ||||| |||||||||||| ||| |||||    
T  25529978 aaggcttaaataagtaaaaggtccttgtaagttggcgcgtttttggttttagtccctataagttttt 25529912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 39870453 - 39870518
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||||||||| |||| | ||||||| | | |||||||||||||| | ||||| |||||    
T  39870453 aggcttaaataagtaaaaggttcttgtaagttgacgcgttttttgttttagttcttgtaagttttt 39870518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 178 - 474
Target Start/End: Original strand, 28426831 - 28427129
Alignment:
Q  178 aaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaac 275  Q
    |||| ||||||||||||||| || ||| ||||||||| |||||||||||||||||| |||||  |||||||||||   | ||||| ||||||||||||||    
T  28426831 aaagccttaaataagtaaaaggtccatgtaagttggcgcattttttgttttagtccttgtaaatttttttgttgcgaaacaaaccctgtatttatcaaac 28426930  T
Q  276 attttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgac 375  Q
    |||||| ||||||||| |||||| || ||  ||| ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||| ||||     
T  28426931 attttggatctagtccttgtcgttcagttccgtgaaaaaaaccatgagctggctaacggagcaatatgtggcacttcgtgagttggcactagttaatgat 28427030  T
Q  376 tcgggttagtataggaactaaaaccaaaaacacaatttaacatagggactaattt--aagaaaatgtaattttcaatgtttaaattttaaaaacttaaaa 473  Q
    | |||||||||| || ||||||||||||||| || ||| ||  ||||||||||||  || ||||  ||||||||||| ||| ||||| ||||||||||||    
T  28427031 tggggttagtatggggactaaaaccaaaaacgcagtttgac--agggactaatttaaaaaaaaaactaattttcaatttttgaatttcaaaaacttaaaa 28427128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 180 - 468
Target Start/End: Complemental strand, 2673023 - 2672734
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaacat 277  Q
    ||||||||||||||||||  |  || ||||||||| ||||||| |||||||||| |||||  ||||||||||   || ||||  |||||||| ||||| |    
T  2673023 aggcttaaataagtaaaagatctatgtaagttggcgcatttttggttttagtccttgtaagtttttttgttgtgagacaaactctgtatttagcaaacgt 2672924  T
Q  278 tttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactc 377  Q
    |||| ||||||| | || |||||||||  ||| |||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||     
T  2672923 tttggatctagtacatgccgtccaattccgtg-aaaaaacgatgagctggctaacagagcaatacgtggcacttcgtaagttggcactagttgatgactg 2672825  T
Q  378 gggttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaaattttaaaaact 468  Q
     |||||||||||| ||||||||||||||| ||||||||||||| || |||||||| |||| |||||  ||||| || ||||||||||||||    
T  2672824 aggttagtatagggactaaaaccaaaaacgcaatttaacatagagattaatttaaaaaaacgtaatcatcaattttaaaattttaaaaact 2672734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 179 - 415
Target Start/End: Complemental strand, 20947653 - 20947420
Alignment:
Q  179 aaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaaca 276  Q
    ||||||||||||||||||| || | ||||||||||| ||||||| |||     ||||||||  |||||||||||  || ||||| |||||||| |||||     
T  20947653 aaggcttaaataagtaaaaagtccctctaagttggcgcatttttggtt-----ccctgtaagattttttgttgcgagacaaaccctgtatttaccaaacg 20947559  T
Q  277 ttttgaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgact 376  Q
    ||||| |||||||||||| |||||||||  ||| ||||||| |||||||||||||| || || || ||||||||||||||||||||||||||||||||||    
T  20947558 ttttggatctagtccctgccgtccaattccgtgaaaaaaacaatgagctggctaacagagcaatatgtggcacttcgtgagttggcactagttgatgact 20947459  T
Q  377 cgggttagtataggaactaaaaccaaaaacacaatttaa 415  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  20947458 cgggttagtatagggactaaaaccaaaaacgcaatttaa 20947420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 28430706 - 28430574
Alignment:
Q  217 attttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaacattttgaatctagtccctgtcgtccaattttgtggaaaa 314  Q
    ||||||||||||||||  |||||  ||||||||| |  || ||||| |||||||| |||||||||| ||||| |||| |||||| |||||| ||| ||||    
T  28430706 attttttgttttagtctttgtaaacttttttgttccgagacaaaccctgtatttaccaaacattttaaatctggtccttgtcgttcaatttcgtg-aaaa 28430608  T
Q  315 aacgatgagctggctaacggaacattacgtggca 348  Q
    ||||||||| | ||||||||| || |||||||||    
T  28430607 aacgatgagttagctaacggagcaatacgtggca 28430574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 11148542 - 11148598
Alignment:
Q  381 ttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaa 437  Q
    |||||| ||| |||||||||||||||||| ||| |||||||||| || |||| ||||    
T  11148542 ttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaa 11148598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 183 - 474
Target Start/End: Complemental strand, 43902160 - 43901867
Alignment:
Q  183 cttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaacatttt 280  Q
    ||||||||||||||| || | | ||| ||||| ||||||||||||||||| ||||||  |||||||||||  || ||||| | |||||| ||||| ||||    
T  43902160 cttaaataagtaaaaagtccctataaattggcgcattttttgttttagtctctgtaagtttttttgttgcgagacaaaccctatatttaccaaacgtttt 43902061  T
Q  281 gaatctagtccctgtcgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcggg 380  Q
    | || |||| | |||||| |||||  ||  ||||||||||||||||||||||  | || || |||||||||| | |||||  ||||||||||||||  ||    
T  43902060 ggatatagttcatgtcgttcaattccgtaaaaaaaacgatgagctggctaacataccaatatgtggcacttcataagttgaaactagttgatgactgagg 43901961  T
Q  381 ttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaatgtaattttcaatgtttaaattttaaaaacttaaaat 474  Q
    |||||||||| |||||||| |||||| |||||||||||||  |||||||||| |||| |||||||||||| ||| |||||||||||||||||||    
T  43901960 ttagtataggcactaaaacaaaaaacgcaatttaacatagaaactaatttaaaaaaacgtaattttcaatttttgaattttaaaaacttaaaat 43901867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 27161937 - 27161768
Alignment:
Q  296 cgtccaattttgtggaaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcgggttagtataggaacta 395  Q
    |||||||||| ||| |||||||| ||||||||||||| ||   ||| |||||||||||||| |||||| |||||||||||| ||||||||||||  ||||    
T  27161937 cgtccaatttcgtgaaaaaaacgttgagctggctaacagaggcttatgtggcacttcgtgacttggcattagttgatgact-gggttagtatagtgacta 27161839  T
Q  396 aaaccaaaaacacaatttaacatagggactaatttaag-aaaatgtaattttcaatgtttaaattttaaaa 465  Q
    |||||||||||||| ||| ||||||| ||||| ||||| |||| ||||| |||||| ||| ||||||||||    
T  27161838 aaaccaaaaacacatttttacataggaactaaattaagaaaaacgtaatcttcaatttttgaattttaaaa 27161768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 219 - 465
Target Start/End: Original strand, 27160343 - 27160592
Alignment:
Q  219 tttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaacattttgaatctagtccctgtcgtccaattttgtggaaaaaa 316  Q
    |||| ||||| ||||||||||  |||||||||||| || || || |||||||| ||||| ||||||   | |||| || |||||||||  ||| ||||||    
T  27160343 ttttggttttcgtccctgtaagtttttttgttgcaagacaacccctgtatttaccaaacgttttgacattcgtccatgccgtccaattccgtg-aaaaaa 27160441  T
Q  317 cgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcgggttagtataggaactaaaaccaaaaacacaatttaac 416  Q
    || ||||||||||||||||   ||| ||||||||| |||| |||||| || ||||||| | ||||||||||||| ||||||| ||||||| || ||| ||    
T  27160442 cgctgagctggctaacggaggcttatgtggcactttgtgacttggcattaattgatgattggggttagtatagggactaaaatcaaaaacgcatttttac 27160541  T
Q  417 atagggactaatttaagaa--aatgtaattttcaatgtttaaattttaaaa 465  Q
    ||||||||||| |||| ||  || ||||| |||||| ||| ||||||||||    
T  27160542 atagggactaaattaaaaaataacgtaatcttcaatttttgaattttaaaa 27160592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 32429936 - 32429865
Alignment:
Q  174 taataaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||| ||||||||||||||||||| || | | ||||||||| | ||||| |||||||||||||||| |||||    
T  32429936 taattaaggcttaaataagtaaaaagtccctgtaagttggcgcgtttttggttttagtccctgtaagttttt 32429865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 37556595 - 37556527
Alignment:
Q  177 taaaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    ||||||||||||||||||||| || | | ||| ||||  | ||||||||||||||||||| ||||||||    
T  37556595 taaaggcttaaataagtaaaaggtccctgtaaattggtgcgttttttgttttagtccctgcaatttttt 37556527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 37547933 - 37547998
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||||||||| || | | ||||||||  | ||||| |||||||||||||||| |||||    
T  37547933 aggcttaaataagtaaaaggtccttgtaagttggtgcgtttttggttttagtccctgtaagttttt 37547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 38758184 - 38758128
Alignment:
Q  381 ttagtataggaactaaaaccaaaaacacaatttaacatagggactaatttaagaaaa 437  Q
    |||||| ||| |||||||||||||||||| ||| |||||||||| || |||| ||||    
T  38758184 ttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaa 38758128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 311 - 465
Target Start/End: Complemental strand, 35931274 - 35931120
Alignment:
Q  311 aaaaaacgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcgggttagtataggaactaaaaccaaaaacacaa 410  Q
    |||||||| |||||||||||||  |   ||| |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||     
T  35931274 aaaaaacgttgagctggctaacaaaggcttatgtggcacttcgtgacttggcattagttgatgact-gggttagtataggaactaaaaccaaaaacgcat 35931176  T
Q  411 tttaacatagggactaatttaag-aaaatgtaattttcaatgtttaaattttaaaa 465  Q
    ||| ||||||||||||| ||||| |||| ||||| |||||| ||| ||||||||||    
T  35931175 ttttacatagggactaaattaagaaaaacgtaatcttcaatttttgaattttaaaa 35931120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 465
Target Start/End: Original strand, 35929560 - 35929813
Alignment:
Q  219 tttttgttttagtccctgtaa--ttttttgttgcatgataaaccgtgtatttatcaaacattttgaatctagtccctgtcgtccaattttgtggaaaaaa 316  Q
    |||| ||||| ||||||||||  |||||||||||  || || || |||||||| ||||| ||||||   | ||||||| |||||||||  ||| ||||||    
T  35929560 ttttggttttcgtccctgtaagtttttttgttgcgagacaacccctgtatttaccaaacgttttgacattcgtccctgccgtccaattccgtgaaaaaaa 35929659  T
Q  317 --cgatgagctggctaacggaacattacgtggcacttcgtgagttggcactagttgatgactcgggttagtataggaactaaaaccaaaaacacaattta 414  Q
      || ||||||||||||||||   ||| || |||||| |||| |||||| || ||||||| | || |||||||||| ||||||| ||||||| || |||     
T  35929660 aacgctgagctggctaacggaggcttatgtcgcactttgtgacttggcattaattgatgattgggattagtatagggactaaaatcaaaaacgcattttt 35929759  T
Q  415 acatagggactaattt---aagaaaatgtaattttcaatgtttaaattttaaaa 465  Q
    |||||| |||||| ||   || |||| ||||| |||||| ||| ||||||||||    
T  35929760 acatagagactaaattaaaaaaaaaacgtaatcttcaatttttgaattttaaaa 35929813  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 33489960 - 33489901
Alignment:
Q  179 aaggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgta 238  Q
    |||||||||||||||||||||| | | |||||| || | ||||| |||||||||||||||    
T  33489960 aaggcttaaataagtaaaatgtccctgtaagttagcgcgtttttcgttttagtccctgta 33489901  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 9672411 - 9672346
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaatttttt 245  Q
    |||||||||||  ||||| || | | |||||| || ||||||||||||| ||||||||||||||||    
T  9672411 aggcttaaatatataaaaggtccctgtaagttcgcgcattttttgttttcgtccctgtaatttttt 9672346  T

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Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 15306352 - 15306270
Alignment:
Q  21 agaggtttagaatatgttgttcaacagctagaagcgatagagaggtgctagctggttattagagagaagaaaggcagagacaa 103  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15306352 agaggtttggaatatgttgttcaacagctagaagagatagagaggtgctagctggttattagagagaagaaaggtagagacaa 15306270  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 19402182 - 19402123
Alignment:
Q  180 aggcttaaataagtaaaatgttcatctaagttggcacattttttgttttagtccctgtaa 239  Q
    ||||||||||| |||||| || | | |||||| |||||||||||||||| ||||||||||    
T  19402182 aggcttaaatatgtaaaaggtccttgtaagttcgcacattttttgttttcgtccctgtaa 19402123  T

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