View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_40 (Length: 258)
Name: NF5076_high_40
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3632852 - 3632595
Alignment:
| Q |
1 |
agataaacatattcgaaaaggnnnnnnnggctgcagtagataaattgtgttaaccaattattaaagataaattcaaaaccttccactgatattatttagt |
100 |
Q |
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| T |
3632852 |
agataaacatattcgaaaaggaaaaaaaggctgcagtagataaattgtgttaaccaattattaaagataaattcaaaaccttccagtgatattatttagt |
3632753 |
T |
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| Q |
101 |
gaatcttataactggttcgtacattgacattacaaggttacacttgaactttttaatgtgattgaagaatgattttatttaatatcaatattttaatccg |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3632752 |
gaatcttataactggttcatacattgacattacaaggttgcacttgaacttttttatgtgattgaaaaatgattttatttaatatcaatattttaatccg |
3632653 |
T |
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| Q |
201 |
atagttgaaagaaaataaaacttacatttccaggagatggagcaacactgagagatga |
258 |
Q |
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| T |
3632652 |
atagttgaaagaaaataaaacttacatttccaggagatggagcaacactgagagatga |
3632595 |
T |
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