View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5076_high_41 (Length: 257)

Name: NF5076_high_41
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5076_high_41
NF5076_high_41
[»] chr5 (3 HSPs)
chr5 (20-160)||(26439993-26440132)
chr5 (113-160)||(26296450-26296497)
chr5 (110-160)||(14148336-14148386)
[»] chr3 (2 HSPs)
chr3 (113-160)||(50662494-50662541)
chr3 (116-160)||(40892798-40892842)
[»] chr8 (2 HSPs)
chr8 (113-160)||(26491455-26491502)
chr8 (111-160)||(4366335-4366384)
[»] chr6 (1 HSPs)
chr6 (113-160)||(2656431-2656478)
[»] chr4 (2 HSPs)
chr4 (111-158)||(26194538-26194585)
chr4 (120-160)||(36860302-36860342)
[»] scaffold0191 (1 HSPs)
scaffold0191 (114-158)||(4544-4588)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 26439993 - 26440132
Alignment:
Q  20 atgtataagcaattgctgaacgaacatttgcttataacaaggaacatagggattgcactattaaaaaatgggaaatgttaacgagtgccctttgttaaag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||  ||||||||| |    
T  26439993 atgtataagcaattgctgaacgaacatttgcttataacaaggaacatatggaatgtactattaaaaaatgggaaatgttaacgagtg-tctttgttaagg 26440091  T
Q  120 aattataaaatgaaatattatattggaaattttgtattcta 160  Q
    ||||||||||||||||||  | || |||||| |||||||||    
T  26440092 aattataaaatgaaatatctttttagaaattgtgtattcta 26440132  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 26296497 - 26296450
Alignment:
Q  113 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 160  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  26296497 gttaaagaattataaaaggaaatattgtattggaaattgtgtattcta 26296450  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 14148386 - 14148336
Alignment:
Q  110 tttgttaaagaattataaaatgaaatattatattggaaattttgtattcta 160  Q
    |||||||| ||||||||||| || ||||||| ||||||||| |||||||||    
T  14148386 tttgttaaggaattataaaaagacatattatcttggaaattgtgtattcta 14148336  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 50662541 - 50662494
Alignment:
Q  113 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 160  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  50662541 gttaaggaattataaaataaaatattatattggaaattttctattcta 50662494  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 40892798 - 40892842
Alignment:
Q  116 aaagaattataaaatgaaatattatattggaaattttgtattcta 160  Q
    |||||||||||||| |||||||| | ||||||||| |||||||||    
T  40892798 aaagaattataaaaggaaatattttcttggaaattgtgtattcta 40892842  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 26491455 - 26491502
Alignment:
Q  113 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 160  Q
    ||||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  26491455 gttaaagaattataaaaggaaatattgtattggaaattgtgtgttcta 26491502  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 4366384 - 4366335
Alignment:
Q  111 ttgttaaagaattataaaatgaaatattatattggaaattttgtattcta 160  Q
    ||||||| |||| ||||||||||||||||| ||| ||||| |||||||||    
T  4366384 ttgttaaggaatcataaaatgaaatattattttgaaaattatgtattcta 4366335  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 2656431 - 2656478
Alignment:
Q  113 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 160  Q
    ||||| |||||||||||  ||||||||||||||||||| |||||||||    
T  2656431 gttaaggaattataaaagaaaatattatattggaaattgtgtattcta 2656478  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 26194538 - 26194585
Alignment:
Q  111 ttgttaaagaattataaaatgaaatattatattggaaattttgtattc 158  Q
    ||||||| |||||||||||||||||||||| ||| ||||| |||||||    
T  26194538 ttgttaaggaattataaaatgaaatattatcttgtaaattgtgtattc 26194585  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 36860302 - 36860342
Alignment:
Q  120 aattataaaatgaaatattatattggaaattttgtattcta 160  Q
    |||||||||| |||||||| ||||||||||| |||||||||    
T  36860302 aattataaaaagaaatattgtattggaaattgtgtattcta 36860342  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 4544 - 4588
Alignment:
Q  114 ttaaagaattataaaatgaaatattatattggaaattttgtattc 158  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||    
T  4544 ttaaagaataataaaatgaaatattgtattgaaaattgtgtattc 4588  T

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