View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5076_high_5 (Length: 503)
Name: NF5076_high_5
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 38060606 - 38061093
Alignment:
| Q |
1 |
attagaaaaagggagaaagttttagagagttttgtgaaggagaaatagaatgcacagttatattcaatgaatcactaagttgtgattttcttattcacat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
38060606 |
attagaaaaagggagaaaattttagagagttttatgaaggagaaataggatgcacggtcatattcaatgaatcactaagttgtaattttcttatcgacat |
38060705 |
T |
|
| Q |
101 |
catcaatttatacaacacttgaaagagctataattgctcaagtgtataacagaaataaaacactaacaaactagttgttataacagaaaactaactctac |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38060706 |
catcaatttattcaacacttgaaagagctataattgctcaagtacataacagaaataaaacacgaacaaactagttgttataacagaaaactaactctat |
38060805 |
T |
|
| Q |
201 |
ctacacagttacttgcactacaagcaaactattattattgactaatttgaattaaactcaccacataaaagagaaataacaaagcatattacattaatct |
300 |
Q |
| |
|
| |||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
38060806 |
cgacacagttacttgcgctacaagaaaactattattcttaactaatttgaattaaactcaccacataaaagagaaataacgaagcatattacattactct |
38060905 |
T |
|
| Q |
301 |
attatgaacttagatgcttcaaggaattctatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaacttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38060906 |
attatgaacttagatgcttcaaggaattctatctgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaacttt |
38061005 |
T |
|
| Q |
401 |
ggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccattg |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
38061006 |
ggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccattg |
38061093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 320 - 487
Target Start/End: Complemental strand, 38073863 - 38073696
Alignment:
| Q |
320 |
caaggaattctatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaat |
419 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
38073863 |
caagaaattctatttgcgtcccttggacacatgagaaggtatactttgttcatttctgaagaagtttagaggatcaacttttgtcttcacttttgccaat |
38073764 |
T |
|
| Q |
420 |
cttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
38073763 |
cttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccatt |
38073696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 265 - 487
Target Start/End: Complemental strand, 38059584 - 38059362
Alignment:
| Q |
265 |
ataaaagagaaataacaaagcatattacattaatctattatgaacttagatgcttcaaggaattctatttgtgtcccttggacaaatgtga--aggtata |
362 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||| |||||||||| |||| |||| |||||| |||| || ||||||||| ||| ||| || ||||||| |
|
|
| T |
38059584 |
ataaaagaaaaataaaaaagcatattgcattattctattatgaccttatctgctacaaggatttct--ttatgtcccttgaacacatgagagaaggtata |
38059487 |
T |
|
| Q |
363 |
ctttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactag |
462 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
38059486 |
ctctgttcatttctgaagaagtttagaggatcaactttagtcttcacttttatcaatcttttgaagttgttcttaaagtatttaacaccccaaacactag |
38059387 |
T |
|
| Q |
463 |
cttgcttataacttgtgtatccatt |
487 |
Q |
| |
|
||||||| || |||||||||||||| |
|
|
| T |
38059386 |
cttgcttgtagcttgtgtatccatt |
38059362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 330 - 486
Target Start/End: Complemental strand, 38082935 - 38082779
Alignment:
| Q |
330 |
tatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaagt |
429 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| | |
|
|
| T |
38082935 |
tatttgtgtcccttggacacaagagaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacatttgccaatcttctgaaat |
38082836 |
T |
|
| Q |
430 |
tgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccat |
486 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
38082835 |
tgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccat |
38082779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 328 - 487
Target Start/End: Complemental strand, 38087365 - 38087206
Alignment:
| Q |
328 |
tctatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaa |
427 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||| |||||||| |
|
|
| T |
38087365 |
tctatttgcgtcccttggacacatgagaaggtatactttgttcatttctgaagaaatttagaggatcaactttagtcttaacttttgccaaccttttgaa |
38087266 |
T |
|
| Q |
428 |
gttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatt |
487 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
38087265 |
gttatttttgaagtacttaacaccccaaatactagcttccttatagcttgtgtacccatt |
38087206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 354 - 488
Target Start/End: Complemental strand, 37955166 - 37955032
Alignment:
| Q |
354 |
gaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacacccc |
453 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37955166 |
gaaggtatactctgttcacttctgaagaagtttagaggatcaactttggtcttcacttttgccaatcttttgaagttattcttgaagtacttaacacccc |
37955067 |
T |
|
| Q |
454 |
aaatactagcttgcttataacttgtgtatccattg |
488 |
Q |
| |
|
| || ||||||| |||||| ||||||||||||||| |
|
|
| T |
37955066 |
atatgctagctttcttatagcttgtgtatccattg |
37955032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University