View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_high_57 (Length: 237)
Name: NF5076_high_57
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37935092 - 37934872
Alignment:
| Q |
1 |
cgttccaaagttaattgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctcaactacctgaacc |
100 |
Q |
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| T |
37935092 |
cgttccaaagctaattgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctcaactacctgaacc |
37934993 |
T |
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| Q |
101 |
tgaaacatcgcaacacaatcacagttcttcatgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtcttcact |
200 |
Q |
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| T |
37934992 |
tgaaacatcgcaacataatcacagtacttcatgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtcttcact |
37934893 |
T |
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| Q |
201 |
ttcatcgagtatcgcagtcat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
37934892 |
ttcatcgagtatcgcagtcat |
37934872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 844977 - 844894
Alignment:
| Q |
130 |
catgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtcttcactttcatcgagtatc |
213 |
Q |
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| T |
844977 |
catgttacctggttctcctttcttacactatctaataaaggcctaagtagatccgaggaaatgtcttcactttcgtcgagtatc |
844894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 10455426 - 10455343
Alignment:
| Q |
130 |
catgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtcttcactttcatcgagtatc |
213 |
Q |
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| T |
10455426 |
catgttacctggttctcctttcttacactatctagtaaaggcctgactagattcgaggaaacatcttcactttcatcgagtatc |
10455343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 845418 - 845313
Alignment:
| Q |
16 |
tgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctcaactacctgaacctgaaacatcgcaaca |
115 |
Q |
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|||||||||| || |||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||| ||| |||||| |
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| T |
845418 |
tgagaaaggacaaagataatttacgtcacagggttcttcaggagcatctttaggtatatcaagattgttctcaacatcctgaacctgaagcattgcaaca |
845319 |
T |
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| Q |
116 |
caatca |
121 |
Q |
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|||||| |
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| T |
845318 |
caatca |
845313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 10455917 - 10455845
Alignment:
| Q |
14 |
attgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctc |
87 |
Q |
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||||||||||||||| | |||||||| ||||| ||||||||||||| | |||||| |||||||||| ||||||| |
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| T |
10455917 |
attgagaaaggaaaaag-taatttacatcacacggttcttcatttgtatctttagttacatcaagactgttctc |
10455845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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