View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_11 (Length: 471)
Name: NF5076_low_11
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 37 - 452
Target Start/End: Original strand, 24990922 - 24991337
Alignment:
| Q |
37 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
136 |
Q |
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| T |
24990922 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
24991021 |
T |
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| Q |
137 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24991022 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
24991121 |
T |
|
| Q |
237 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24991122 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcattttaatgtgcaaataattatattcttctattatttt |
24991221 |
T |
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| Q |
337 |
taggtgataaagctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgtg |
436 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24991222 |
taggcgataaagttggataatttcatcactcacgagcttccctttgatgagataaaccaagccttcaatcttttgattgccgggaagtcattgagatgtg |
24991321 |
T |
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| Q |
437 |
ttctaacactctaaga |
452 |
Q |
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|||| ||||||||||| |
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| T |
24991322 |
ttcttacactctaaga |
24991337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 47 - 452
Target Start/End: Original strand, 24994607 - 24995006
Alignment:
| Q |
47 |
aaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaagttgcttccc |
146 |
Q |
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|||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
24994607 |
aaaactgtgcactatcaaattttatgtctaatt--gtataatgtagggttggggattgactatactattgggaattcatgcatcaccaaagttacttcct |
24994704 |
T |
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| Q |
147 |
atccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
246 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24994705 |
ctccacccaatggagctctttgatggccgcaaaatcgaaggatcggtctttggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
24994804 |
T |
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| Q |
247 |
tgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttttaggtgataa |
346 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||| ||||| |
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| T |
24994805 |
tgaaaggggt-aatgatcatcacta---gcaaaaactcaaattatgcgatgcgttttagtgtccaagtaattatattcttctattatttttaggcgataa |
24994900 |
T |
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| Q |
347 |
agctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgtgttctaacact |
446 |
Q |
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|| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||| |
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| T |
24994901 |
agttggatgatttcatcactcacgaacttccctttgacgagataaacaaagccttcgatcttttgattgccgggaagtcactgagatgtcttctgacact |
24995000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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