View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5076_low_12 (Length: 463)
Name: NF5076_low_12
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 42662442 - 42662011
Alignment:
| Q |
19 |
tctggatcacttgtttactatgcnnnnnnncacataccttctttgtcaagttttcaaaatggaaactcgtcaaaatcaaatctttctgaagcagatcaaa |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662442 |
tctggatcacttgtttactatgcaaaaaaacacataccttctttgtcaagttttcaaaatggaaactcgtcaaaatcaaatctttctgaagcagatcaaa |
42662343 |
T |
|
| Q |
119 |
ggaatctgattgaagaaatagttgagttgcttccaaatgaaaagggtgtaacacaaactaaatttttgcttagaagtttaagaacagctatggctttata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662342 |
ggaatctgattgaagaaatagttgagttgcttccaaatgaaaagggtgtaacacaaactaaatttttgcttagaagtttaagaacagctatggctttata |
42662243 |
T |
|
| Q |
219 |
tgcaagctcttgttgttgtgcaagcttggagaaaagaattggttttcaattagatgaagctgatcttgaagatctcttgattcctaacattggttactca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662242 |
tgcaagctcttgttgttgtgcaagcttggagaaaagaattggttttcaattagatgaagctgatcttgaagatctcttgattcctaacattggttactca |
42662143 |
T |
|
| Q |
319 |
atggagacaatccatgatattgattgtgttcaaagaatgcttgatcatttcatgattgttgataatgatgatgctgattctacatctaataatgatattg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662142 |
atggagacaatccatgatattgattgtgttcaaagaatgcttgatcatttcatgattgttgataatgatgatgctgattctacatctaataatgatattg |
42662043 |
T |
|
| Q |
419 |
tcgaggaagagagacgcattggtgcaaattgt |
450 |
Q |
| |
|
| ||||||||||||||||||| || ||||||| |
|
|
| T |
42662042 |
ttgaggaagagagacgcattgttggaaattgt |
42662011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University