View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5076_low_15 (Length: 402)
Name: NF5076_low_15
Description: NF5076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5076_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 41487683 - 41487304
Alignment:
| Q |
7 |
tcgaagaatatgacagaaccaggctcacctcagtaatcaaaacccctgcccctcccctcctaggcaacatcaagctaattgttaaagaacagttcaaact |
106 |
Q |
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| T |
41487683 |
tcgaaaaacatgacagaaccaggctcacctcagtaatcaaaacccctgcccctcccctcctaggcaacatcaagctaattgttaaagaacagttcaaact |
41487584 |
T |
|
| Q |
107 |
aactcaagactataaatggttttttattgtatggaaaatgctttatttttaggctcaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaa |
206 |
Q |
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| T |
41487583 |
aactcaagactataaatggttttttattgtatggaaaatgctttatttttaggctcaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaa |
41487484 |
T |
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| Q |
207 |
aatttaaaccagactacaacaggagactattgataccaccaactcgtctcgattactctttaacatatattttagtaatcaacaatttcaaaaaacttca |
306 |
Q |
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| T |
41487483 |
aatttaaaccagactacaacaggagacgattgataccaccaactcgtctcgattactttttaacatatattttagtaatcaacaatttcaaaaaacttca |
41487384 |
T |
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| Q |
307 |
actcgttacaaagttttaaaccgaaagtcacaagcattatctgctaaaaaagtgctcctacatgataagtaatgatatat |
386 |
Q |
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| T |
41487383 |
actcgttacaaagttttaaaccttaagtcacaagcattatctgctaaaaaagtgctcctacatgataagtaatgatatat |
41487304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 80 - 378
Target Start/End: Complemental strand, 41486743 - 41486444
Alignment:
| Q |
80 |
gctaattgtta-aagaacagttcaaactaactcaagactataaatggttttttattgtatggaaa-------atgctttatttttaggctcaggtacgat |
171 |
Q |
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| T |
41486743 |
gctaattgttataaaaacagttcaaactaaatcaagaatataac-gcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgat |
41486645 |
T |
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| Q |
172 |
ttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agactattgataccaccaactcgtctcgattactctttaac |
270 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| ||||| | || ||| |
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| T |
41486644 |
ttcaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaattgataccacctactcgtcgtgattaattttcaac |
41486553 |
T |
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| Q |
271 |
atatattttagtaatcaacaatttc-aaaaaacttcaactcgttacaaagttttaaaccgaaagtcacaagcattatctgctaaaaaagtgctcctacat |
369 |
Q |
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| T |
41486552 |
ataaatttcaataatcaacaatttccaaaaaacttcaactcctttcaaagttttaacacaaaagtcatacacattatctgctaaaagagtactcctacat |
41486453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 40753830 - 40753662
Alignment:
| Q |
175 |
aaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agactattgataccacca------actcgtctcgattactcttt |
267 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| | |||| ||| |||| ||||||| |||| |||| || ||||||| ||| |
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| T |
40753830 |
aaatgaatttaacttaaatgtttcgagacaaaaatttaaaccaggcaacaaaagggagacgattgatagtaccacctaccactcaccttgattacttttt |
40753731 |
T |
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| Q |
268 |
aacatatattttagtaatcaacaatttcaaaaaacttcaactcgttacaaagttttaaaccgaaagtca |
336 |
Q |
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| T |
40753730 |
gacatatgtttcagtaatcaacaatttcaaaaaacttcaacttgtttcgaagttttaacccaaaagtca |
40753662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 41479507 - 41479424
Alignment:
| Q |
162 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacaggagactattgataccac |
245 |
Q |
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| T |
41479507 |
caggtatgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccaaactacaaagagagacaattgataccac |
41479424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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